K40924

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K40924

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K40924

Determination of introduced cDNA(s)

  • J023136M05 - Rice Full-length cDNAs - Original: J023136M05

    full reading [+] show sequence

    Nucleotide sequence: J023136M05 - full reading 
    GGGTAGCAAT ACTGTTAACT TCTGCAACAA ATCATGGATT GGAACCACAT 
    TAGCATGGGA AAGCAAGGCC CTAAAATCAA GGCATATGAA CAAGATCTTT 
    TCCATGTCCG TTCAACAAGC AAGCAAAAGC AAAGTTGCTG TAAAACCTCT 
    GGAATTGGAT AATGCGAAGG AGCCACCCCT TAACTTATAC AAACCAAAGG 
    AGCCTTACAC AGCCACAATT GTCTCAGTCG AAAGGCTTGT AGGCCCTAAA 
    GCTCCTGGTG AAACATGCCA TATTGTTATT GATCATGGTG GCAATGTTCC 
    ATACTGGGAA GGACAAAGTT ATGGTGTCAT TCCTCCAGGA GAGAACCCGA 
    AGAAACCTGG TTCCCCAAAT ACTGTCCGGC TCTATTCTAT TGCATCTACT 
    AGGTACGGTG ATTCTTTTGA TGGAAAGACT GCCAGTTTGT GTGTTCGTCG 
    TGCTGTTTAT TATGATCCTG AAACTGGAAA AGAAGACCCC ACAAAGAAAG 
    GTATCTGCAG TAATTTCCTA TGCGACTCTA AACCAGGCGA CAAAGTTCAG 
    ATAACAGGTA TCGTGCTCCT TTCAGATGGC ATATAAATAT CATTCTTATA 
    TGTTCCAACG ATAAACAATA GCCCCTAACT GAAAATTTAG GCTTTTAACC 
    TTTTTTTCTT ATCTGAAGTT CACATCTGTG ATGCAATGTT TTTTTCTGAA 
    ATCTTTTGGA TGGGTATGTA TAGAGGGCAT ATTAGCTTAT AAGCTTTCTG 
    AAAGATGTGG CTGGAGAAAA TATTAGCTTA TAAGCTTTCT GAAAGATGTG 
    GTTGTGGGAG AAAACAATCT GAAGAAGAGA TGTCTTTCAA TATTATTATG 
    ACTTGTTTTG TAACTTATGG CTTGCATGTG GTATTCCAGC CTCAAGCTTA 
    TCACTGAAGT TACTCTTCAC ATGCAGGCCC CTCAGGCAAA ATCATGCTTC 
    TACCTGAGGA TGATCCAAAT GCAACCCATA TCATGATTGC TACTGGCACT 
    GGTGTTGCTC CCTACCGTGG CTATCTACGT CGTATGTTCA TGGAGGATGT 
    CCCAAGTTTC AAGTTTGGTG GTCTGGCTTG GCTATTTCTA GGTGTTGCTA 
    ACACTGATAG CCTTCTGTAT GATGAAGAGT TCACAAACTA CCTTCAGCAG 
    TATCCAGACA ATTTCAGGTA TGATAAAGCA CTAAGTAGGG AACAGAAGAA 
    TAAGAATGGT GGAAAGATGT ATGTGCAGGA CAAGATTGAA GAGTACAGCG 
    ATGAAATTTT TAAACTTTTG GATGGCGGTG CACATATCTA CTTTTGTGGT 
    TTGAAGGGTA TGATGCCAGG GATCCAGGAC ACACTCAAGA GAGTAGCTGA 
    GCAAAGAGGT GAGAGTTGGG AGCAGAAGCT GTCGCAGCTC AAAAAGAACA 
    AACAATGGCA CGTGGAGGTT TACTAAGTTA CTAAAAAGGC ACGGGCTGTG 
    ATTTTGTGAT TGTTTTGCAG CGAGTTGAAA CATAAAACAG TAAAAAGCGA 
    TGATTCTCGT TGCATTGTAA AATTGTCAAT CTTATTCATA AGCTTCTGCT 
    TGACATGGTG AATAAAATGA AGCATATGCT AATTTTGACT TAGTATTGTG 
    AAATCATACC AGCTTTTCAT GGGCATCATG CATGATAAAA ATGTGAAGTA 
    GTGGGACTTT CCT

    Gene models with high sequence identity

    1. AT4G05390.2 [+] show detail - root FNR 1
      E-value: 2e-86; Score: 317.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther FERREDOXIN REDUCTASE 9.6e-10
    HMMPanther FLAVODOXIN-RELATED 9.6e-10
    HMMPanther Ferredoxin Reductase 1.1e-126
    HMMPanther FLAVODOXIN-RELATED 1.1e-126
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-05
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-05
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-05
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7.5e-17
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7.5e-17
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7.5e-17
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7.5e-17
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7.5e-17
    ProfileScan Ferredoxin reductase-type FAD-binding domain 11.957
    Coil coiled-coil 0
    Gene3D no description 5.5e-45
    Gene3D no description 7.9e-43
    HMMPfam Oxidoreductase FAD/NAD(P)-binding 1.4e-26
    superfamily Riboflavin synthase-like beta-barrel 2.6e-34
    superfamily Ferredoxin reductase-like, C-terminal NADP-li 3.2e-50

    See the detailed result >

    AT4G05390.2

    Model type
    Protein coding
    Short Description
    root FNR 1
    Curator Summary
    Encodes a root-type ferredoxin:NADP(H) oxidoreductase.
    Computational Description
    root FNR 1 (RFNR1); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: root FNR 2 (TAIR:AT1G30510.1).
    Link
    InterPro Scan - TAIR