K41543

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K41543

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K41543

Determination of introduced cDNA(s)

  • J013088I21 - Rice Full-length cDNAs - Original: J013088I21

    full reading [+] show sequence

    Nucleotide sequence: J013088I21 - full reading
    GTCTGCTTCT TTCCTCCGAC GACTCGCCGC CGCCTGAAAT CTCTTTCTTG 
    ATTCGTGCGC TCCTGAGCTA CCCCGATGGC CGCCCAATCT TCCACTCCCT
    CGCCGCAAGA TGGTTCTGGT AGAGGTGAAT TCTCAGACAA TTTGGTACTT
    CAAACCCCAC AGCCAATGCG GGAGGATTAC ATACAGAATG CTGTTAACTT
    TCTTGGACAT CCAAAAGTGA AGGGTTCTCC AGTATTTTAC AGGCGCTCTT
    TTCTGGAAAA GAAAGGCCTT ACAAAGGAAG AAATCGACGA GGCCTTCCGT
    CGGGTTCCTG ATCCACAGCC AAACAGTACA GATGTTGCAG CTGTTGCTTC
    ACAACAAGCC GGCATCGCAA ATCAATCTGC TGGAGTACAA CCTTACGAGA
    CAGTTCAAGC ACCACAAGCC ATTAACACTG GTCCTATCGT TCCACATGCG
    CAGCCGCAAC TTAGCTGGTC CCGTACTCTC ATTGGTGTAG GTGTTTTCCT
    CGGAGTTGGG GCTAGTGCTG CTGTCATCCT CAAGAAATTG TTTGTTCCTA
    GGCTAAAATC TTGGATCCAA GGAGCCCATG TTGAAGGGGA TGAAATTTCT
    GGGAATGAAC TTAAATCCAA GTTTTATGAA GAAATCAAAG CAGCCATACA
    AGATTCTGCA TCAGCGTTTT CTGATATTGC TAAAACAAAC CAAGAGTTGC
    TTGCTTCAAA GGATGAAGAT AAGAAGATAC TTACAAAGTT GGCACAAGCA
    TTTGATTCGC AAGCAGAGGC GTTTAGATCC TTGAGTGATT CCTTGAATCG
    TATGAGTGAG AATAGGTTTT ACCAGTACAA TCTAATGGAG GATCATTTTC
    AATCTGCCCC ATGGAATGGG CCAACTACAA ATTCATGGAG AGCTTCTCAG
    CAAACAAACG CATACAACAC ATCACCACGC AGTGATTTTG ACTCCGGGAG
    GCATCCGTTC ATGCCAGTAC CGGGAGAACC TTCACCTGGA GCATTTCCGG
    CGAGATCCTA TGTTGAGCAG CAGCGGATGC AGAGGCCTGG GTACGGATTT
    CAGCCTCAGA TGAGCAATGA CAGGTGGAAC CCTGGCTCGC CATTGACGAA
    CTACCACGGT GCTCCTCCGT ATCAGCAGTA TCACCATGGA TCCACCAACG
    CCATCGATGA AGCTCCAGCT CCAGCTCCAG TTCCAGCTCC AGCTCCACCA
    GCTGAAAGCC CGTTCCAGCG TCGCTGGGTT CCCCCACAGC CACCGGGCGT
    CGTCATGCCG GAGGCCGTGG CCGCCATACG GCAGCCGAGG CAGCAAGTTG
    CAGCGGCATC GAGACCGTCG GAATCCGCCG CGGCGACAGA GCAGCCACAG
    TCAGGTGACG TCGCCGGTGG CGCCGCCATG GCCAATGCGG GCAATGGCGA
    GGCCGAGCAA GAGCGGGAAG CTGCTGCTTA ATTACTCCAT TTCTTTTTTT
    TTTGTTTGCC ACGCGATGCA TGCGTCTCTC GTGTACAAAA TACAGACTAG
    TGACGATTAC CTATGAGAAA AAGAAGAGGA ACAAATGTTG TGTATTC

    Gene models with high sequence identity

    1. AT5G62810.1 [+] show detail - peroxin 14
      E-value: 1e-48; Score: 191.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G62810.1

    Model type
    Protein coding
    Short Description
    peroxin 14
    Curator Summary
    mutant has a defect in the intracellular transport of thiolase from the cytosol to glyoxysomes (formerly known as ped2)
    Computational Description
    peroxin 14 (PEX14); FUNCTIONS IN: protein transporter activity, protein binding; INVOLVED IN: peroxisome organization, protein targeting to peroxisome; LOCATED IN: cytosol, peroxisome, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisome membrane anchor protein Pex14p, N-terminal (InterPro:IPR006785); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G62800.1); Has 366 Blast hits to 354 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 94; Fungi - 149; Plants - 89; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR