K41548

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K41548

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K41548

Determination of introduced cDNA(s)

  • J023036O11 - Rice Full-length cDNAs - Original: J023036O11

    full reading [+] show sequence

    Nucleotide sequence: J023036O11 - full reading
    GGCATCCTCT GCGTCTCTCC CTCCTCCCTC TGCAGCGCCG AGCCGGAGGA 
    ATCCTGACCG GAGGTCGGCC TCGCCCTCCC CTCCTCGCGC GCGCGCCGCC
    GCCGCCGGGA AGGCCGGCTG GCGAGGTAGT CGAAAAATAT CGCCTCTGAA
    GGTCAGCACT GAGGCATGGG GGAGTGCAGT GAGCACAGGT GTTGGGACGA
    GCTACTACCG GACGCACTGG GCCTCATCTT TCGCAAACTC TCACTCAAGG
    ATGTGCTCAC CGTGGTGCCG CGGGTTTGCA AATCCTGGGG GCGGGTGGTT
    GCAGGGCCTT ACTGCTGGCA GGAGATCGAC ATCCAGGAGT GGAGCCAGCA
    GCAGAGCAAG CCGGACCAGC TCAAGCGCAT GGTTCGCATG CTCGTCGCCC
    GAAGCGGCGG CTCGTTCCAC CGCATTAGCG TGTCCGGCCT GCCTGGCGAT
    CCATTGTTCA CCTTCATTGG GGACCATGCA CGGTCACTTA AAACCATGGA
    GCTTCCAAGG AGTGATATCA GCGACTCCTT AGTGGAAAAT GTTGCGCCAA
    GATTGTCCAA CGTTACATTC TTGGACATAA GCAGCTGTAC TAAGATCGGT
    GCTCGTGCTC TAGAAGCATT CGGCAAGCAT TGTAAATCCC TGATCGGACT
    TCGGCGAGTC ATGCACCCTA CAGATGTTGT CGGTAGGGCC AGTCAACATG
    ATGAGGCTCG TGCTATTGCT TGCAATATGC CAAAGCTCCG TCATCTTGAG
    ATAGGGTACA TGCTCATTGC AACGAAGGCT GTTGTTGAGA TTGCCTCTCA
    GTGTCATGAT CTCAAATTCT TAGATCTGCG TGGCTGCTGG AATGTTGACG
    ATAAACTATT GCAAGAGAGC TATCCTGGGC TGAAAGTCGT TGGCCCCTAT
    GTGGACGACT GCTATGAGAA CAGCTTCTGG GAGGAGTGTT CCGATGACTC
    GGATGATTCC ATCTATTGGG AGCTCATGGA TGATGATTAT TATGCGGCGG
    GGAGCGATGA CGAGGGCATA TGGGACGATG GTCAAGGTCT TGAGGGCTTA
    GAAGTAAGGT TTTATGGTGG TGGATTTAGT GAAAGCCATG CTGGTTTTGA
    TTGGCCGCCA TCTCCATGAA AGCTGCATCA AGATCTTCAG AAAAGTGCCT
    GTGTATTCCT GCTGCTTCCT CTTATGTGCT TCAAGTTTTA AACATCAGCT
    TCCTTAGTAC TAGTATGTGC TTGTATTTGT GTCATCCCCT AGCTTGCAGA
    TATTTGAAGC CAACTATCTG GTAGTATAAA ATGTTTGGTG TTTATACATA
    AAAAATAGCA ACATGGTCTG GTAGTACTGA AACAATGTTG CTACAAATTT
    GTTTCAGTAC TAGTAATTTA TTTCAGAGGT TTTCCATGCG CCTGTAATCC
    TGTACTAGTT CTCTTTTATA CTGCGGTTCT ATGACTTCTA CT

    Gene models with high sequence identity

    1. AT4G08980.5 [+] show detail - F-BOX WITH WD-40 2
      E-value: 4e-81; Score: 299.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RNI-like 1.9e-16
    HMMPanther N7-RELATED PROTEIN 5e-37
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 5e-37
    Gene3D no description 7.8e-36

    See the detailed result >

    AT4G08980.5

    Model type
    Protein coding
    Short Description
    F-BOX WITH WD-40 2
    Curator Summary
    Encodes an F-box gene that is a novel negative regulator of AGO1 protein levels and may play a role in ABA signalling and/or response.
    Computational Description
    F-BOX WITH WD-40 2 (FBW2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process, posttranscriptional regulation of gene expression; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G05460.1); Has 1165 Blast hits to 1048 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 539; Fungi - 16; Plants - 571; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR