K41548

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K41548

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K41548

Determination of introduced cDNA(s)

  • J023036O11 - Rice Full-length cDNAs - Original: J023036O11

    full reading [+] show sequence

    Nucleotide sequence: J023036O11 - full reading 
    GGCATCCTCT GCGTCTCTCC CTCCTCCCTC TGCAGCGCCG AGCCGGAGGA 
    ATCCTGACCG GAGGTCGGCC TCGCCCTCCC CTCCTCGCGC GCGCGCCGCC 
    GCCGCCGGGA AGGCCGGCTG GCGAGGTAGT CGAAAAATAT CGCCTCTGAA 
    GGTCAGCACT GAGGCATGGG GGAGTGCAGT GAGCACAGGT GTTGGGACGA 
    GCTACTACCG GACGCACTGG GCCTCATCTT TCGCAAACTC TCACTCAAGG 
    ATGTGCTCAC CGTGGTGCCG CGGGTTTGCA AATCCTGGGG GCGGGTGGTT 
    GCAGGGCCTT ACTGCTGGCA GGAGATCGAC ATCCAGGAGT GGAGCCAGCA 
    GCAGAGCAAG CCGGACCAGC TCAAGCGCAT GGTTCGCATG CTCGTCGCCC 
    GAAGCGGCGG CTCGTTCCAC CGCATTAGCG TGTCCGGCCT GCCTGGCGAT 
    CCATTGTTCA CCTTCATTGG GGACCATGCA CGGTCACTTA AAACCATGGA 
    GCTTCCAAGG AGTGATATCA GCGACTCCTT AGTGGAAAAT GTTGCGCCAA 
    GATTGTCCAA CGTTACATTC TTGGACATAA GCAGCTGTAC TAAGATCGGT 
    GCTCGTGCTC TAGAAGCATT CGGCAAGCAT TGTAAATCCC TGATCGGACT 
    TCGGCGAGTC ATGCACCCTA CAGATGTTGT CGGTAGGGCC AGTCAACATG 
    ATGAGGCTCG TGCTATTGCT TGCAATATGC CAAAGCTCCG TCATCTTGAG 
    ATAGGGTACA TGCTCATTGC AACGAAGGCT GTTGTTGAGA TTGCCTCTCA 
    GTGTCATGAT CTCAAATTCT TAGATCTGCG TGGCTGCTGG AATGTTGACG 
    ATAAACTATT GCAAGAGAGC TATCCTGGGC TGAAAGTCGT TGGCCCCTAT 
    GTGGACGACT GCTATGAGAA CAGCTTCTGG GAGGAGTGTT CCGATGACTC 
    GGATGATTCC ATCTATTGGG AGCTCATGGA TGATGATTAT TATGCGGCGG 
    GGAGCGATGA CGAGGGCATA TGGGACGATG GTCAAGGTCT TGAGGGCTTA 
    GAAGTAAGGT TTTATGGTGG TGGATTTAGT GAAAGCCATG CTGGTTTTGA 
    TTGGCCGCCA TCTCCATGAA AGCTGCATCA AGATCTTCAG AAAAGTGCCT 
    GTGTATTCCT GCTGCTTCCT CTTATGTGCT TCAAGTTTTA AACATCAGCT 
    TCCTTAGTAC TAGTATGTGC TTGTATTTGT GTCATCCCCT AGCTTGCAGA 
    TATTTGAAGC CAACTATCTG GTAGTATAAA ATGTTTGGTG TTTATACATA 
    AAAAATAGCA ACATGGTCTG GTAGTACTGA AACAATGTTG CTACAAATTT 
    GTTTCAGTAC TAGTAATTTA TTTCAGAGGT TTTCCATGCG CCTGTAATCC 
    TGTACTAGTT CTCTTTTATA CTGCGGTTCT ATGACTTCTA CT

    Gene models with high sequence identity

    1. AT4G08980.5 [+] show detail - F-BOX WITH WD-40 2
      E-value: 4e-81; Score: 299.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RNI-like 1.9e-16
    HMMPanther N7-RELATED PROTEIN 5e-37
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 5e-37
    Gene3D no description 7.8e-36

    See the detailed result >

    AT4G08980.5

    Model type
    Protein coding
    Short Description
    F-BOX WITH WD-40 2
    Curator Summary
    Encodes an F-box gene that is a novel negative regulator of AGO1 protein levels and may play a role in ABA signalling and/or response.
    Computational Description
    F-BOX WITH WD-40 2 (FBW2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process, posttranscriptional regulation of gene expression; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G05460.1); Has 1165 Blast hits to 1048 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 539; Fungi - 16; Plants - 571; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR