K42040

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K42040

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42040

Determination of introduced cDNA(s)

  • J033136H20 - Rice Full-length cDNAs - Original: J033136H20

    full reading [+] show sequence

    Nucleotide sequence: J033136H20 - full reading
    GAGGAACCCA AGAGGAGATC GGAAGAAAGA GAGAGAGATT GAGGAGGAGG 
    AGGAGGAGGA GCCATGGCTG CGGTGGTGCG TGGCGTGTTG AACGGCATCC
    GGGAGAAGGG CCTCTCCAAC TTCCTCCGCC ATGCCCGCGA CGAAGGCTAC
    TTCAAATGCC TTCTGGATGG AAACCTCTTG CAAACTAAAA TCCACAATAT
    CGGCGCCACA CTTGTAGGAG TAGACAAGTT CGGCAACAAA TATTATGAAA
    AACTACATGA CACTCAGTAT GGAAGGCACA GGTGGGTAGA ATATGCAGAG
    AAAGGGCGCT ACAATGCATC CCAAGTGCCC CCTGAATGGC ATGGATGGCT
    GCACCACATC ACCGACAGCA CTGGGGACGA GCTACTGGAG CAGAATGCTA
    AAGCGTACAT CGTGGATCAC AAGGAGAACT TCTCCGGCGA GGGTGAGGAA
    CTGATCTACC ACTCCAAGGG GCATGCTCTA AACCCAGGAC AAAGGGACTG
    GACGAGGTAC CAGCCGTGGG AACCAAAGAA AGAAGAGGCA ACCTAATTAA
    GGCACTGATC CAGTGTGTCA TTTGATTTGG TGTCTAAAAC AACAGTCAGC
    CGGCTCGGTG GGCTGAATCT GAATAATGTT GTCTTGAGGA TTGTTTACCT
    GAGAATGGAA GAACATGATG GAGTTTTAAT TCCCATATGA TATGTTTGTT
    TATTTTTGAT GGAGCGGAGC GTCGTCCCCA TTGAATGGAC GAGGGTTGAA
    TGCTGGTTTG CTGAAATGAA ATATTGTCGA TTGTCTGG

    Gene models with high sequence identity

    1. AT3G03100.1 [+] show detail - NADH:ubiquinone oxidoreductase, 17.2kDa subunit
      E-value: 4e-66; Score: 248.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NADH:ubiquinone oxidoreductase, 17.2kDa subunit 5.4e-29
    HMMPanther NADH:ubiquinone oxidoreductase, 17.2kDa subunit 1.6e-38

    See the detailed result >

    AT3G03100.1

    Model type
    Protein coding
    Short Description
    NADH:ubiquinone oxidoreductase, 17.2kDa subunit
    Computational Description
    NADH:ubiquinone oxidoreductase, 17.2kDa subunit; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, 17.2kDa subunit (InterPro:IPR007763); Has 1526 Blast hits to 1526 proteins in 350 species: Archae - 0; Bacteria - 415; Metazoa - 153; Fungi - 83; Plants - 51; Viruses - 0; Other Eukaryotes - 824 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR