K42040

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K42040

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42040

Determination of introduced cDNA(s)

  • J033136H20 - Rice Full-length cDNAs - Original: J033136H20

    full reading [+] show sequence

    Nucleotide sequence: J033136H20 - full reading 
    GAGGAACCCA AGAGGAGATC GGAAGAAAGA GAGAGAGATT GAGGAGGAGG 
    AGGAGGAGGA GCCATGGCTG CGGTGGTGCG TGGCGTGTTG AACGGCATCC 
    GGGAGAAGGG CCTCTCCAAC TTCCTCCGCC ATGCCCGCGA CGAAGGCTAC 
    TTCAAATGCC TTCTGGATGG AAACCTCTTG CAAACTAAAA TCCACAATAT 
    CGGCGCCACA CTTGTAGGAG TAGACAAGTT CGGCAACAAA TATTATGAAA 
    AACTACATGA CACTCAGTAT GGAAGGCACA GGTGGGTAGA ATATGCAGAG 
    AAAGGGCGCT ACAATGCATC CCAAGTGCCC CCTGAATGGC ATGGATGGCT 
    GCACCACATC ACCGACAGCA CTGGGGACGA GCTACTGGAG CAGAATGCTA 
    AAGCGTACAT CGTGGATCAC AAGGAGAACT TCTCCGGCGA GGGTGAGGAA 
    CTGATCTACC ACTCCAAGGG GCATGCTCTA AACCCAGGAC AAAGGGACTG 
    GACGAGGTAC CAGCCGTGGG AACCAAAGAA AGAAGAGGCA ACCTAATTAA 
    GGCACTGATC CAGTGTGTCA TTTGATTTGG TGTCTAAAAC AACAGTCAGC 
    CGGCTCGGTG GGCTGAATCT GAATAATGTT GTCTTGAGGA TTGTTTACCT 
    GAGAATGGAA GAACATGATG GAGTTTTAAT TCCCATATGA TATGTTTGTT 
    TATTTTTGAT GGAGCGGAGC GTCGTCCCCA TTGAATGGAC GAGGGTTGAA 
    TGCTGGTTTG CTGAAATGAA ATATTGTCGA TTGTCTGG

    Gene models with high sequence identity

    1. AT3G03100.1 [+] show detail - NADH:ubiquinone oxidoreductase, 17.2kDa subunit
      E-value: 4e-66; Score: 248.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NADH:ubiquinone oxidoreductase, 17.2kDa subunit 5.4e-29
    HMMPanther NADH:ubiquinone oxidoreductase, 17.2kDa subunit 1.6e-38

    See the detailed result >

    AT3G03100.1

    Model type
    Protein coding
    Short Description
    NADH:ubiquinone oxidoreductase, 17.2kDa subunit
    Computational Description
    NADH:ubiquinone oxidoreductase, 17.2kDa subunit; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, 17.2kDa subunit (InterPro:IPR007763); Has 1526 Blast hits to 1526 proteins in 350 species: Archae - 0; Bacteria - 415; Metazoa - 153; Fungi - 83; Plants - 51; Viruses - 0; Other Eukaryotes - 824 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR