K42340

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	increased length (PATO:0000573) (Rosette leaf::Shape::long) dark green (PATO:0001249) (Rosette leaf::Color::dark) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42340

Determination of introduced cDNA(s)

J023086N12 - Rice Full-length cDNAs - Original: J023086N12

full reading [+] show sequence

GTTGGTCTAG GCTGTAACTA CCTTTTTTTA TTTACTTTAT TTGTTTCCTG 
CTCTATGTAG TGACATGCTG TGTTATATTG CTGAATTATA ATACCATCAA 
ATAGTTTGGA GAAAGTACTT TATTTTTTCT GCTGGCATGT TTGAACATTC 
ACAATACTAT ATCGTGCATA TGTACCTCTC TGTTTTGGTC TTGTCAGTTA 
AAAACGAACG GAGATTTCTT GTGCTCTCTT TTTTTTAGTA ATTTCTGGAG 
CTTAGGTTTC TTTAGCGTTT GAAAGGAATG AGGAATTGAT AATGATCGAG 
ATGTCGTGTT ATCAACTTTT CTTTCTTAAA CAATATACTA GTCATACTCC 
TTTTCCTGTA TTTACAGTGT CAAATCTCTG TCAGAGGATG AATGGATACT 
TGACCCGGTT ATCATTGCTG ATATATATGA GCAACAGGTA TATATCTTCA 
CTTCCATCAA TACACTAGAA ACTATGCACA TTATGATCTT ATTAAAAGAG 
CTTTTGTGTA TCAATGGCGT TACACTTTCC ACTGTATTGA TCTTTTAAAG 
AGTGTCATTT GTTGTTTTCT TATAAAGAAT TATAGGTGAT ATTGTTATTA 
GTACATGCTG ACCCGTTATT GTAGATTTCA TAGTTATCAT CTACTAGGCT 
TTTTATACAA GTTGTCTCTA TGATCTGCTC TGCAGCTCTG GCTTGTATGG 
TAGTAACTGA AGCAAAAAGT CCTGACTTAC AAAACAATTG TGGGTGTGAC 
TCTGTTAGTT GCAGTTGCTG GCTATTTTCA CATGAAGCTA TTTTTTACTA 
AATATGATTG ATGTAATTAT ATGTAAAAAG GTAAAAATTG TAACGAACTG 
CTTGGAATGT CTAGTAAAAC TATCATAGCG TCCATTCTGC GTTACTTTGA 
TGTGCAGTTG TGTACCCATT CCTGGGTCAT GCTGAAACAC AAATTGGCGT 
GATACGCTTC ATTAATTGGT GATTCCATTT TCAGGGCCTT GATTTCATTG 
TCGATGGAGG TACTAGAATT GCTGACCCGT CTACTGTGGT TGATATGACG 
GGAAGCTACC CTACCATCAT TCGTCAGGGA AAGGTATGCA TTTTCATTAA 
TGGACTAAAG TTATCCTACC ATATGACTAT ACTATCAAGC AAAAGGAAAT 
TTCTCATTCT ATCCCCTGAC ATTTGGCAAA TGATATGTAC TGCATTTAAA 
CACACCGTTA TGTATTATCT CGTAATGCTT ATCTATTTCA TATTTGTGAC 
CTATTTCGTT GACTTATGAT TGGCATAATT AGCTAATACT GGATGCTTCA 
ACTGCATTTT ATGCGGTTTG TATAAATGCA CAGAGGCCCT TATGTCTTCC 
TTTTCCTGCT TTAGGGCCCT AAGCTAGATT GGATGGTAGC GGAAGATGAG 
GAACAAGAGT CGCGACCAAC ATTTGCGTAT AAAGCAGCTT GAGTCACTCT 
TCGGCTGTCC TATCATAGGA GGTTGTAAAC TTGTAATTAC TTCACCAGAG 
CCTGGTCTTT TGACTCCTGA ATCTGCTACT CTCAGCTAGA CCAGTATATA 
TACTACATGT TGTAAATATG CCAGGGAATG TAACCAGGAA TCGACATAGT 
TCACCAGATT ATTTTCAGTT CACTGAGCCT C

Gene models with high sequence identity

AT3G01920.1 [+] show detail - DHBP synthase RibB-like alpha/beta domain
E-value: 0.000000004; Score: 60.10

InterPro Scan Digest

See the detailed result >

AT3G01920.1

Model type: Protein coding
Short Description: DHBP synthase RibB-like alpha/beta domain
Computational Description: DHBP synthase RibB-like alpha/beta domain; CONTAINS InterPro DOMAIN/s: Sua5/YciO/YrdC/YwlC (InterPro:IPR004388), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945), Sua5/YciO/YrdC, N-terminal (InterPro:IPR006070); Has 7227 Blast hits to 7227 proteins in 2277 species: Archae - 193; Bacteria - 5396; Metazoa - 127; Fungi - 76; Plants - 77; Viruses - 0; Other Eukaryotes - 1358 (source: NCBI BLink).
Link: InterPro Scan - TAIR