K42340

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K42340

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42340

Determination of introduced cDNA(s)

  • J023086N12 - Rice Full-length cDNAs - Original: J023086N12

    full reading [+] show sequence

    Nucleotide sequence: J023086N12 - full reading
    GTTGGTCTAG GCTGTAACTA CCTTTTTTTA TTTACTTTAT TTGTTTCCTG 
    CTCTATGTAG TGACATGCTG TGTTATATTG CTGAATTATA ATACCATCAA
    ATAGTTTGGA GAAAGTACTT TATTTTTTCT GCTGGCATGT TTGAACATTC
    ACAATACTAT ATCGTGCATA TGTACCTCTC TGTTTTGGTC TTGTCAGTTA
    AAAACGAACG GAGATTTCTT GTGCTCTCTT TTTTTTAGTA ATTTCTGGAG
    CTTAGGTTTC TTTAGCGTTT GAAAGGAATG AGGAATTGAT AATGATCGAG
    ATGTCGTGTT ATCAACTTTT CTTTCTTAAA CAATATACTA GTCATACTCC
    TTTTCCTGTA TTTACAGTGT CAAATCTCTG TCAGAGGATG AATGGATACT
    TGACCCGGTT ATCATTGCTG ATATATATGA GCAACAGGTA TATATCTTCA
    CTTCCATCAA TACACTAGAA ACTATGCACA TTATGATCTT ATTAAAAGAG
    CTTTTGTGTA TCAATGGCGT TACACTTTCC ACTGTATTGA TCTTTTAAAG
    AGTGTCATTT GTTGTTTTCT TATAAAGAAT TATAGGTGAT ATTGTTATTA
    GTACATGCTG ACCCGTTATT GTAGATTTCA TAGTTATCAT CTACTAGGCT
    TTTTATACAA GTTGTCTCTA TGATCTGCTC TGCAGCTCTG GCTTGTATGG
    TAGTAACTGA AGCAAAAAGT CCTGACTTAC AAAACAATTG TGGGTGTGAC
    TCTGTTAGTT GCAGTTGCTG GCTATTTTCA CATGAAGCTA TTTTTTACTA
    AATATGATTG ATGTAATTAT ATGTAAAAAG GTAAAAATTG TAACGAACTG
    CTTGGAATGT CTAGTAAAAC TATCATAGCG TCCATTCTGC GTTACTTTGA
    TGTGCAGTTG TGTACCCATT CCTGGGTCAT GCTGAAACAC AAATTGGCGT
    GATACGCTTC ATTAATTGGT GATTCCATTT TCAGGGCCTT GATTTCATTG
    TCGATGGAGG TACTAGAATT GCTGACCCGT CTACTGTGGT TGATATGACG
    GGAAGCTACC CTACCATCAT TCGTCAGGGA AAGGTATGCA TTTTCATTAA
    TGGACTAAAG TTATCCTACC ATATGACTAT ACTATCAAGC AAAAGGAAAT
    TTCTCATTCT ATCCCCTGAC ATTTGGCAAA TGATATGTAC TGCATTTAAA
    CACACCGTTA TGTATTATCT CGTAATGCTT ATCTATTTCA TATTTGTGAC
    CTATTTCGTT GACTTATGAT TGGCATAATT AGCTAATACT GGATGCTTCA
    ACTGCATTTT ATGCGGTTTG TATAAATGCA CAGAGGCCCT TATGTCTTCC
    TTTTCCTGCT TTAGGGCCCT AAGCTAGATT GGATGGTAGC GGAAGATGAG
    GAACAAGAGT CGCGACCAAC ATTTGCGTAT AAAGCAGCTT GAGTCACTCT
    TCGGCTGTCC TATCATAGGA GGTTGTAAAC TTGTAATTAC TTCACCAGAG
    CCTGGTCTTT TGACTCCTGA ATCTGCTACT CTCAGCTAGA CCAGTATATA
    TACTACATGT TGTAAATATG CCAGGGAATG TAACCAGGAA TCGACATAGT
    TCACCAGATT ATTTTCAGTT CACTGAGCCT C

    Gene models with high sequence identity

    1. AT3G01920.1 [+] show detail - DHBP synthase RibB-like alpha/beta domain
      E-value: 4e-09; Score: 60.10

     

    InterPro Scan Digest

    See the detailed result >

    AT3G01920.1

    Model type
    Protein coding
    Short Description
    DHBP synthase RibB-like alpha/beta domain
    Computational Description
    DHBP synthase RibB-like alpha/beta domain; CONTAINS InterPro DOMAIN/s: Sua5/YciO/YrdC/YwlC (InterPro:IPR004388), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945), Sua5/YciO/YrdC, N-terminal (InterPro:IPR006070); Has 7227 Blast hits to 7227 proteins in 2277 species: Archae - 193; Bacteria - 5396; Metazoa - 127; Fungi - 76; Plants - 77; Viruses - 0; Other Eukaryotes - 1358 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR