K42545

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) abnormal (PATO:0000460) (Rosette leaf::Others)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42545

Determination of introduced cDNA(s)

J023001I15 - Rice Full-length cDNAs - Original: J023001I15

full reading [+] show sequence

GAGCCTTACA CAAAACACAT CAAACACACC AAGCTCAGAC AAGAGAAGAG 
AAGAGAAGCC AAGAAATCAT CATCATCTCA CGCATTTCTT GCTCGAATTC 
CAGCTCGATT GAGCATCATG GGTTACAACG AGCTGATTCC GGGGTTGCCG 
GAGGAGGTGG CGAGGGAGTG CCTCATCCGG GTGGGGTTCG ACCAGCTGCC 
GGCGGTGCGC CGCATCTCGC GCCAGTGGAA GGCGGAGGTG GAGTCGCCGG 
CGTACAACCG CCTGAGGAAG GCGGAGGGCC TGGCGCGCCC GGCGCTCGCG 
CTGGTGCAGG CGCGGCGTGA GCTCGCCGAG GCGGGCCCGG CGGCGGACAA 
GCAGTCGTCG GCCGGCGGTG TGCCGGGGAA CTCGTACCGG ATGGTGCTGT 
TGGACCCGGC GGAGGGGAGG TGGACGCCGC TGCCGGAGGT GGGTGGAGCG 
AGTGGGAGCT TGCCGCTGTT CTGCCAGGTG GCGGCGGTGG ATGGCGGTGT 
GGAGGGGAGG AAGCGGCTGG TGGTCGTCGG CGGCTGGGAC CCGGAGACGT 
GGGCGCCGAC GGACTCGGTG CTCGTGTATG ACTTCCTCAC GGGCGCGTGG 
CGCCGTGGCG CGGCCATGCC GGGCCCGCGC CGGTCGTTCT TCGCGTGCGC 
CGCCGTCGGC GGGAAGGTGT TCGTCGCCGG TGGCCACGAC GAGGAGAAGA 
ACGCCCTTCG ATCGGCGCTG GCGTACGACC CGGACGCCGA CGCGTGGGCC 
GCGCTCCCCG ACATGGCGGA GGAGCGCGAC GAGCCGCGCG GGCTCTGCGT 
CGACGGCAAG TTCCTGGTCG TCGGCGGGTA CCCGACGCCG GCGCAGGGGC 
GATTCGTCGG CTCCGCCGAG TGGTTCGACC CGGCGACGTC CACCTGGTCC 
GCCGTCCAAG AAGGCTTCGT CGACGACGGC GCGTGCCCGA GAACCTGCAG 
CGCCGCCCCC GAGGCCGGAG ACCGCATGTA CATGCTCCGC GACGGGCACC 
TCGTGGCGCG CCACGGCGCC ATCTCCTCCG CCCCCGCGGC GTGGCGGCCC 
GTGGCGCCGG TGCCGGAGGA CGCGCGCACC GCGGCGGCCG TTTCCGTCAT 
CCCCGACGGC CGCGTCGTGG TCATCGGGTC CGACTGCCAC GGCGGCGACC 
AGACGGTGTA CACGCTGCGG GAGGAGGCCG GCAAGCCCGC GTCGTGGGCG 
CGCGCGCCGG CGCCGCCCGA GTTCTCCGGG CACGTCCAGG CCGCCTGCCT 
TCTAGAAATC TGAAGCGTAT TACAGAAACT AAATTCCGTG TATAATTGTG 
TATCCATCTA TGTACATATC ACATATGTGT GAGTAGCAGA GTTCGAGTTT 
GTACAGCAAC TTTTGCGAGG AAAAAAAATG GTTAAACGAG TGTATCAATT 
TTG

Gene models with high sequence identity

AT1G80440.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
E-value: 3e-44; Score: 176.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	KELCH-RELATED	3e-16
HMMPanther	Kelch related	3e-16
superfamily	Galactose oxidase/kelch, beta-propeller	1.7e-46
HMMSmart	Kelch repeat type 1	2.3e-07
HMMSmart	Kelch repeat type 1	9e-05
Gene3D	Kelch-type beta propeller	1.3e-36
HMMPfam	Kelch repeat type 1	1.2e-05
HMMPfam	Kelch repeat type 1	9.3e-11

See the detailed result >

AT1G80440.1

Model type: Protein coding
Short Description: Galactose oxidase/kelch repeat superfamily protein
Computational Description: Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G15670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR