K42545

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K42545

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42545

Determination of introduced cDNA(s)

  • J023001I15 - Rice Full-length cDNAs - Original: J023001I15

    full reading [+] show sequence

    Nucleotide sequence: J023001I15 - full reading
    GAGCCTTACA CAAAACACAT CAAACACACC AAGCTCAGAC AAGAGAAGAG 
    AAGAGAAGCC AAGAAATCAT CATCATCTCA CGCATTTCTT GCTCGAATTC
    CAGCTCGATT GAGCATCATG GGTTACAACG AGCTGATTCC GGGGTTGCCG
    GAGGAGGTGG CGAGGGAGTG CCTCATCCGG GTGGGGTTCG ACCAGCTGCC
    GGCGGTGCGC CGCATCTCGC GCCAGTGGAA GGCGGAGGTG GAGTCGCCGG
    CGTACAACCG CCTGAGGAAG GCGGAGGGCC TGGCGCGCCC GGCGCTCGCG
    CTGGTGCAGG CGCGGCGTGA GCTCGCCGAG GCGGGCCCGG CGGCGGACAA
    GCAGTCGTCG GCCGGCGGTG TGCCGGGGAA CTCGTACCGG ATGGTGCTGT
    TGGACCCGGC GGAGGGGAGG TGGACGCCGC TGCCGGAGGT GGGTGGAGCG
    AGTGGGAGCT TGCCGCTGTT CTGCCAGGTG GCGGCGGTGG ATGGCGGTGT
    GGAGGGGAGG AAGCGGCTGG TGGTCGTCGG CGGCTGGGAC CCGGAGACGT
    GGGCGCCGAC GGACTCGGTG CTCGTGTATG ACTTCCTCAC GGGCGCGTGG
    CGCCGTGGCG CGGCCATGCC GGGCCCGCGC CGGTCGTTCT TCGCGTGCGC
    CGCCGTCGGC GGGAAGGTGT TCGTCGCCGG TGGCCACGAC GAGGAGAAGA
    ACGCCCTTCG ATCGGCGCTG GCGTACGACC CGGACGCCGA CGCGTGGGCC
    GCGCTCCCCG ACATGGCGGA GGAGCGCGAC GAGCCGCGCG GGCTCTGCGT
    CGACGGCAAG TTCCTGGTCG TCGGCGGGTA CCCGACGCCG GCGCAGGGGC
    GATTCGTCGG CTCCGCCGAG TGGTTCGACC CGGCGACGTC CACCTGGTCC
    GCCGTCCAAG AAGGCTTCGT CGACGACGGC GCGTGCCCGA GAACCTGCAG
    CGCCGCCCCC GAGGCCGGAG ACCGCATGTA CATGCTCCGC GACGGGCACC
    TCGTGGCGCG CCACGGCGCC ATCTCCTCCG CCCCCGCGGC GTGGCGGCCC
    GTGGCGCCGG TGCCGGAGGA CGCGCGCACC GCGGCGGCCG TTTCCGTCAT
    CCCCGACGGC CGCGTCGTGG TCATCGGGTC CGACTGCCAC GGCGGCGACC
    AGACGGTGTA CACGCTGCGG GAGGAGGCCG GCAAGCCCGC GTCGTGGGCG
    CGCGCGCCGG CGCCGCCCGA GTTCTCCGGG CACGTCCAGG CCGCCTGCCT
    TCTAGAAATC TGAAGCGTAT TACAGAAACT AAATTCCGTG TATAATTGTG
    TATCCATCTA TGTACATATC ACATATGTGT GAGTAGCAGA GTTCGAGTTT
    GTACAGCAAC TTTTGCGAGG AAAAAAAATG GTTAAACGAG TGTATCAATT
    TTG

    Gene models with high sequence identity

    1. AT1G80440.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
      E-value: 3e-44; Score: 176.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther KELCH-RELATED 3e-16
    HMMPanther Kelch related 3e-16
    superfamily Galactose oxidase/kelch, beta-propeller 1.7e-46
    HMMSmart Kelch repeat type 1 2.3e-07
    HMMSmart Kelch repeat type 1 9e-05
    Gene3D Kelch-type beta propeller 1.3e-36
    HMMPfam Kelch repeat type 1 1.2e-05
    HMMPfam Kelch repeat type 1 9.3e-11

    See the detailed result >

    AT1G80440.1

    Model type
    Protein coding
    Short Description
    Galactose oxidase/kelch repeat superfamily protein
    Computational Description
    Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G15670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR