K42604 - RIKEN Arabidopsis Genome Encyclopedia

K42604

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K42604

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42604

Determination of introduced cDNA(s)

  • J013116I24 - Rice Full-length cDNAs - Original: J013116I24

    full reading [+] show sequence

    Nucleotide sequence: J013116I24 - full reading
    GGAGGTCCGT GGCGTTGGAG TGAGGACTGA GGAGGAAGAA GAGGGCGGGA 
    TCTAGGGTAC CGGATGCGCT GGCTGTGCTG AGTGAGAGTA GAGATGAGCG
    CGTCTCGGTT CATCAAGTGC GTCACCGTGG GGGACGGCGC CGTGGGCAAG
    ACCTGCATGC TCATCTCCTA CACCTCCAAC ACCTTCCCCA CGGACTATGT
    TCCAACTGTT TTTGATAACT TCAGTGCAAA TGTTGTGGTC GATGGGAGCA
    CTGTGAACTT GGGGTTGTGG GATACAGCAG AGGACTACAA TAGGCTACGC
    CCGTTGAGCT ATCGTGGCGC TGATGTTTTC CTGCTGGCCT TTTCTCTGAT
    CAGCAAAGCA AGCTATGAGA ATGTTTCTAA AAAGTGGATA CCTGAATTAA
    GGCATTATGC TCCTGGTGTG CCAATAATTC TCGTTGGAAC AAAGCTTGAT
    CTGCGGGATG ATAAGCAATT TTTCGTAGAT CACCCTGGTG CTGTACCTAT
    TTCCACTGCT CAGGGCGAAG AGCTGAGGAA ACTCATTGGT GCAGCGGCAT
    ACATTGAATG CAGTTCAAAA ACACAGCAAA ACATCAAGGC AGTTTTCGAT
    GCTGCGATTA AGGTGGTTCT CCAGCCTCCA AAGCAAAAGA AGAAGAAGAA
    AAAGGCGCAG AAAGGATGTG CCATCTTGTA ATTAAATGGT AGACAGTGCA
    GTGCAGATCG ATGTATCCCT TCATTTGTAG CCTCTGGCTT CAATCGTCGC
    TTGTTTGTAT AATTACGCTA GATGCCACCG GCAGAAGATA TAATATAGTC
    CTCCTGCCTT TGTGGTGTTG GTCTCTAAGG TCGTCCAGAC TCCAGAGTCC
    AGACGCATTT GGTTTCTTTT GTTCTATCTA TAATCAATCT ATCTATATCT
    GCTAGTGTTG TGCTTCTGCT AGTTATGCGG ATGAGAAAGG GAATTTACCT
    TCCCTGTTTC TGGGCTTCTG GCTTGCACGG GAAAGGTCGG TTTGTTTGCA
    ATATACTACT ACCACTCCAG CTTGCTAGGT TGATTAAAAT AAGCTACCAG
    TAAGAATCGA TATGACGTAT CAGCATTTTA TTAAATCAGT GATTAATTTT
    ACC

    Gene models with high sequence identity

    1. AT4G35020.3 [+] show detail - RAC-like 3
      E-value: 1e-92; Score: 336.00

    AT4G35020.3

    Model type
    Protein coding
    Short Description
    RAC-like 3
    Curator Summary
    A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein.
    Computational Description
    RAC-like 3 (RAC3); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RAC-like GTP binding protein 5 (TAIR:AT1G75840.1).
    Link
    InterPro Scan - TAIR