K42605

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K42605

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42605

Determination of introduced cDNA(s)

  • J013105N04 - Rice Full-length cDNAs - Original: J013105N04

    full reading [+] show sequence

    Nucleotide sequence: J013105N04 - full reading
    GAGCTTCTTC TTCCTGCTTC CTCTCTCTCT CTTCTCTCCT CCTCCTCCCA 
    CTGAGATCCC TCTCCCCTCC CCGCCATCGC CATGGCTCCC CCACCGCCGC
    CGCCGCCGCC GTCGGAGGAA GAGACGAGAC ACTAGAAAAG ACGGTTCTTG
    ACCGAGTTTG CGGCCGATCC GGGCTTGGAT TTGCCACGGG AAAGGAAGGA
    GTTTCGGGGG CTGATAGAGT GAAAGGCGAC GAGGGAGAAG ATGGCCTCGG
    AAATGGTTAA GGCGGCGACG AGTGAGAAGC TCAAGGAGAT GGATTGGGCC
    AAGAACATCG AAATCTGCGA GCTCGTCGCT CAGGATCCTG GGAAAGCGAA
    GGATGTGATC AAGCCGATAA AGAAGTATTT AGGTAGCAGG AGCAAGAACA
    CTCAACTTTA TGCTGTTATG CTGTTAGAAA TGCTCATGAA TAACTGCGGA
    GAACCTATCC ACAAGCAGGT CATTGATAAC GGTCTTCTCC CGATACTTGT
    GAAGATTGTG AAGAAAAAGA CAGAATTACC AGTTCGTGAA AAAATATTTC
    TTTTGCTGGA TGCGACCCAA ACATCCCTTG GTGGAGTTAA AGGGAAATTC
    CCTCAGTACT ATGGGGCATA TTATGAGTTG GTGTCTGCTG GCGTTCAGTT
    TTCGAATCGC CCAAATGTTG TTGTTACACA AGCACAAGCT CCAGTCCCGG
    TCCCAGAACC AACAATCGAA CCAAATAATA ACAGTTTATC TAGGAGATTG
    GACGAAGGAC AGAAGGAAGT GCATGCGCAG CCTGTTTCCG AGTCAAGTAT
    AATTCGGAAA GCTTCTAGTG TCATGGAAGT TCTAAAGGAC GTGCTTGATT
    CGATGGATCC TAGACACCCT GAGGGAGCAA CTGATGAGTT TGTGTTGGAT
    CTTGTGGAGC AATGCACATT TCAAAAACAG CGAATAATGC ATCTAGTTAT
    GACATCAAGG GATGAAGTGG TGGTATCACA AGCAATAGAA CTGAACGAGA
    GCTTCACAAG GTCCTTGTAC GGCATGATGC GTTGCTTTCA GTTCAGCCAA
    CTACAACAGT AGCTTCTACT CTCAAGGAGG AAGAGGAAGA AGATGCCGAA
    AGCCTTTACC GGAGGCTTCG AAAGGGAAAA GCATTATCGG AAGATTATAC
    AGATGACTCC ATACCATCAT TTCGATCTAT ACCTGAAGAC AAGATGCGCC
    GCCCACTCAC CATTGAGCCA TCCAACACTG ATAAGAAACT GGGGGCACTG
    AATATTCGCT CGCCATATCC TGAAGCGAGG CCTGACGTGC TGATTCCACC
    ACCGCCTGCC AAGCACGCCG AGAGGGAGAG GTTCTTTCGG GAGAAGAGCA
    TGGATGCCAA CTTGCTGGGC CATCTTAGGG GCTTATCATT GCACAGCCGG
    GACGGCAGTA GCTCGTGTAG CGGCAGCACA GATTATGGAG ACTGAGGTGT
    AGGTATATGC GGTACATAAA GGATTATTTT TTGTTCTTCA GGATGATATT
    CTGCTTGCCC GGCAATTGAT GTTGAGAGAG GCAGCCTCAG CCTCATCGTC
    GTCATCTTCT CGCTGACCAT TGTACACTTG GTTTTCTAAT TCTTTTATAA
    TTCTTCCCCC TTCCGCTTAC CTGACATTAT CGGAAAGTTG AACAATGCTG
    TGTTGTGAGC TTTCAGTTCT ATAGAGATGC TTGTGTGGCA AGCTGTGTGA
    GTGACC

    Gene models with high sequence identity

    1. AT5G63640.1 [+] show detail - ENTH/VHS/GAT family protein
      E-value: 8e-78; Score: 288.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart VHS subgroup 2.4e-27
    HMMPanther TARGET OF MYB1 RELATED (TOM1 - RELATED), PLAN 1.2e-84
    HMMPanther VHS DOMAIN CONTAINING PROTEIN FAMILY 1.2e-84
    HMMPfam VHS 2.1e-21
    HMMPfam GAT 1.9e-13
    ProfileScan VHS 32.22
    ProfileScan GAT 10.719
    Coil coiled-coil 0
    Coil coiled-coil 0
    Gene3D ENTH/VHS 7.8e-33
    superfamily ENTH/VHS 1.6e-39
    superfamily GAT-like domain 6.2e-16

    See the detailed result >

    AT5G63640.1

    Model type
    Protein coding
    Short Description
    ENTH/VHS/GAT family protein
    Computational Description
    ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT4G32760.1); Has 1276 Blast hits to 1268 proteins in 185 species: Archae - 0; Bacteria - 4; Metazoa - 656; Fungi - 270; Plants - 272; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR