K42605

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	flower (PO:0009046)	abnormal (PATO:0000460) (Flower::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42605

Determination of introduced cDNA(s)

J013105N04 - Rice Full-length cDNAs - Original: J013105N04

full reading [+] show sequence

GAGCTTCTTC TTCCTGCTTC CTCTCTCTCT CTTCTCTCCT CCTCCTCCCA 
CTGAGATCCC TCTCCCCTCC CCGCCATCGC CATGGCTCCC CCACCGCCGC 
CGCCGCCGCC GTCGGAGGAA GAGACGAGAC ACTAGAAAAG ACGGTTCTTG 
ACCGAGTTTG CGGCCGATCC GGGCTTGGAT TTGCCACGGG AAAGGAAGGA 
GTTTCGGGGG CTGATAGAGT GAAAGGCGAC GAGGGAGAAG ATGGCCTCGG 
AAATGGTTAA GGCGGCGACG AGTGAGAAGC TCAAGGAGAT GGATTGGGCC 
AAGAACATCG AAATCTGCGA GCTCGTCGCT CAGGATCCTG GGAAAGCGAA 
GGATGTGATC AAGCCGATAA AGAAGTATTT AGGTAGCAGG AGCAAGAACA 
CTCAACTTTA TGCTGTTATG CTGTTAGAAA TGCTCATGAA TAACTGCGGA 
GAACCTATCC ACAAGCAGGT CATTGATAAC GGTCTTCTCC CGATACTTGT 
GAAGATTGTG AAGAAAAAGA CAGAATTACC AGTTCGTGAA AAAATATTTC 
TTTTGCTGGA TGCGACCCAA ACATCCCTTG GTGGAGTTAA AGGGAAATTC 
CCTCAGTACT ATGGGGCATA TTATGAGTTG GTGTCTGCTG GCGTTCAGTT 
TTCGAATCGC CCAAATGTTG TTGTTACACA AGCACAAGCT CCAGTCCCGG 
TCCCAGAACC AACAATCGAA CCAAATAATA ACAGTTTATC TAGGAGATTG 
GACGAAGGAC AGAAGGAAGT GCATGCGCAG CCTGTTTCCG AGTCAAGTAT 
AATTCGGAAA GCTTCTAGTG TCATGGAAGT TCTAAAGGAC GTGCTTGATT 
CGATGGATCC TAGACACCCT GAGGGAGCAA CTGATGAGTT TGTGTTGGAT 
CTTGTGGAGC AATGCACATT TCAAAAACAG CGAATAATGC ATCTAGTTAT 
GACATCAAGG GATGAAGTGG TGGTATCACA AGCAATAGAA CTGAACGAGA 
GCTTCACAAG GTCCTTGTAC GGCATGATGC GTTGCTTTCA GTTCAGCCAA 
CTACAACAGT AGCTTCTACT CTCAAGGAGG AAGAGGAAGA AGATGCCGAA 
AGCCTTTACC GGAGGCTTCG AAAGGGAAAA GCATTATCGG AAGATTATAC 
AGATGACTCC ATACCATCAT TTCGATCTAT ACCTGAAGAC AAGATGCGCC 
GCCCACTCAC CATTGAGCCA TCCAACACTG ATAAGAAACT GGGGGCACTG 
AATATTCGCT CGCCATATCC TGAAGCGAGG CCTGACGTGC TGATTCCACC 
ACCGCCTGCC AAGCACGCCG AGAGGGAGAG GTTCTTTCGG GAGAAGAGCA 
TGGATGCCAA CTTGCTGGGC CATCTTAGGG GCTTATCATT GCACAGCCGG 
GACGGCAGTA GCTCGTGTAG CGGCAGCACA GATTATGGAG ACTGAGGTGT 
AGGTATATGC GGTACATAAA GGATTATTTT TTGTTCTTCA GGATGATATT 
CTGCTTGCCC GGCAATTGAT GTTGAGAGAG GCAGCCTCAG CCTCATCGTC 
GTCATCTTCT CGCTGACCAT TGTACACTTG GTTTTCTAAT TCTTTTATAA 
TTCTTCCCCC TTCCGCTTAC CTGACATTAT CGGAAAGTTG AACAATGCTG 
TGTTGTGAGC TTTCAGTTCT ATAGAGATGC TTGTGTGGCA AGCTGTGTGA 
GTGACC

Gene models with high sequence identity

AT5G63640.1 [+] show detail - ENTH/VHS/GAT family protein
E-value: 8e-78; Score: 288.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	VHS subgroup	2.4e-27
HMMPanther	TARGET OF MYB1 RELATED (TOM1 - RELATED), PLAN	1.2e-84
HMMPanther	VHS DOMAIN CONTAINING PROTEIN FAMILY	1.2e-84
HMMPfam	VHS	2.1e-21
HMMPfam	GAT	1.9e-13
ProfileScan	VHS	32.22
ProfileScan	GAT	10.719
Coil	coiled-coil	0
Coil	coiled-coil	0
Gene3D	ENTH/VHS	7.8e-33
superfamily	ENTH/VHS	1.6e-39
superfamily	GAT-like domain	6.2e-16

See the detailed result >

AT5G63640.1

Model type: Protein coding
Short Description: ENTH/VHS/GAT family protein
Computational Description: ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT4G32760.1); Has 1276 Blast hits to 1268 proteins in 185 species: Archae - 0; Bacteria - 4; Metazoa - 656; Fungi - 270; Plants - 272; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
Link: InterPro Scan - TAIR