K42612

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K42612

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42612

Determination of introduced cDNA(s)

  • J013106E09 - Rice Full-length cDNAs - Original: J013106E09

    full reading [+] show sequence

    Nucleotide sequence: J013106E09 - full reading 
    GACCTTCCCC TGAAGAGAGA GAGTGAGAGA GAGAGAGAGA GAGAGAGAGG 
    AGACGCCACC ACGCGCACCG AGCTCGCGAT TCCAATCCCC GCACGCCTCC 
    TCCGCCACCG CCGCCTCGGC CTCCGCCGCC GCCGCGACCA GGGTTAGGAT 
    CACAGTTGCG ATGGAACACA AGGAGGCTGG CTGCCAGCAG CCCGAGGGCC 
    CAATCCTTTG CATCAATAAC TGCGGCTTCT TTGGCAGCGC GGCGACCATG 
    AACATGTGCT CCAAGTGCCA CAAGGAGATG ATCATGAAGG AGGAGCAGGC 
    CAAGCTTGCT GCCTCCTCCA TCGATAGCAT TGTCAATGGT TGTGACGGTG 
    GGAAGGAGCA TATTGTTGCT GCCAGTGGTA GCACGGCGGT GGCGGTGGCT 
    CAGGTCGAGG CGAAGACGCT CGTTGTGCAG CCTACCGATG TCGCGGGCAC 
    CAGCGAGGAG GTTGCTGTAG TCCCCAAGGT CAAGGAAGGG CCGAACCGGT 
    GCGCTACCTG TAGGAAGAGG GTTGGGCTGA CGGGATTCAA CTGCCGGTGC 
    GGTAACATGT ACTGTGCGTT GCACCGCTAC TCCGACAAGC ATGAATGCCA 
    GTTCGACTAC CGGACTGCGG CTAGGGATGC CATCGCCAAG GCCAACCCAG 
    TGGTGAAGGC TGAGAAGCTC GACAAGATCT AAGGCGGCTA GGGGCGTGGA 
    ATGGATTGCA ACCTACAAGA TTTCAACATC CACCTTTGCT GCTCTATCCT 
    CACACTTCTT CTTGTCGGCT GCTACATTTC TTAAATTGTT CAACTTTGTG 
    ATGCACACTG CATCCTGGCA GCCGAAAGAA TTCATCCTCT CAGTCAAGTC 
    AAGTGGTTTG CGTGTTGGGT ATGTTGTGTA ATCTTTATTC TTGGTGGTTT 
    TCGGTCAGTA TTGTGGTGTC TCATTTAGCT AGCTCTGTGA TGTACTATGT 
    CCCATGCTTG CTACATTTCA ATCAGTAATA GTTATCAGCA ATGGTCCATC

    Gene models with high sequence identity

    1. AT1G51200.4 [+] show detail - A20/AN1-like zinc finger family protein
      E-value: 7e-48; Score: 187.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, A20-type 0.000000025
    HMMSmart Zinc finger, AN1-type 5.5e-16
    HMMPanther PVPR3 PROTEIN 6.2e-90
    HMMPanther PRK1-ASSOCIATED ZINC FINGER PROTEIN 6.2e-90
    Gene3D Zinc finger, AN1-type 1.1e-26
    Coil coiled-coil 0
    ProfileScan Zinc finger, A20-type 9.727
    ProfileScan Zinc finger, AN1-type 12.067
    HMMPfam Zinc finger, AN1-type 0.0000000000035
    HMMPfam Zinc finger, A20-type 0.0000000000038

    See the detailed result >

    AT1G51200.4

    Model type
    Protein coding
    Short Description
    A20/AN1-like zinc finger family protein
    Computational Description
    A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1).
    Link
    InterPro Scan - TAIR