K42612

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K42612

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42612

Determination of introduced cDNA(s)

  • J013106E09 - Rice Full-length cDNAs - Original: J013106E09

    full reading [+] show sequence

    Nucleotide sequence: J013106E09 - full reading
    GACCTTCCCC TGAAGAGAGA GAGTGAGAGA GAGAGAGAGA GAGAGAGAGG 
    AGACGCCACC ACGCGCACCG AGCTCGCGAT TCCAATCCCC GCACGCCTCC
    TCCGCCACCG CCGCCTCGGC CTCCGCCGCC GCCGCGACCA GGGTTAGGAT
    CACAGTTGCG ATGGAACACA AGGAGGCTGG CTGCCAGCAG CCCGAGGGCC
    CAATCCTTTG CATCAATAAC TGCGGCTTCT TTGGCAGCGC GGCGACCATG
    AACATGTGCT CCAAGTGCCA CAAGGAGATG ATCATGAAGG AGGAGCAGGC
    CAAGCTTGCT GCCTCCTCCA TCGATAGCAT TGTCAATGGT TGTGACGGTG
    GGAAGGAGCA TATTGTTGCT GCCAGTGGTA GCACGGCGGT GGCGGTGGCT
    CAGGTCGAGG CGAAGACGCT CGTTGTGCAG CCTACCGATG TCGCGGGCAC
    CAGCGAGGAG GTTGCTGTAG TCCCCAAGGT CAAGGAAGGG CCGAACCGGT
    GCGCTACCTG TAGGAAGAGG GTTGGGCTGA CGGGATTCAA CTGCCGGTGC
    GGTAACATGT ACTGTGCGTT GCACCGCTAC TCCGACAAGC ATGAATGCCA
    GTTCGACTAC CGGACTGCGG CTAGGGATGC CATCGCCAAG GCCAACCCAG
    TGGTGAAGGC TGAGAAGCTC GACAAGATCT AAGGCGGCTA GGGGCGTGGA
    ATGGATTGCA ACCTACAAGA TTTCAACATC CACCTTTGCT GCTCTATCCT
    CACACTTCTT CTTGTCGGCT GCTACATTTC TTAAATTGTT CAACTTTGTG
    ATGCACACTG CATCCTGGCA GCCGAAAGAA TTCATCCTCT CAGTCAAGTC
    AAGTGGTTTG CGTGTTGGGT ATGTTGTGTA ATCTTTATTC TTGGTGGTTT
    TCGGTCAGTA TTGTGGTGTC TCATTTAGCT AGCTCTGTGA TGTACTATGT
    CCCATGCTTG CTACATTTCA ATCAGTAATA GTTATCAGCA ATGGTCCATC

    Gene models with high sequence identity

    1. AT1G51200.4 [+] show detail - A20/AN1-like zinc finger family protein
      E-value: 7e-48; Score: 187.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, A20-type 2.5e-08
    HMMSmart Zinc finger, AN1-type 5.5e-16
    HMMPanther PVPR3 PROTEIN 6.2e-90
    HMMPanther PRK1-ASSOCIATED ZINC FINGER PROTEIN 6.2e-90
    Gene3D Zinc finger, AN1-type 1.1e-26
    Coil coiled-coil 0
    ProfileScan Zinc finger, A20-type 9.727
    ProfileScan Zinc finger, AN1-type 12.067
    HMMPfam Zinc finger, AN1-type 3.5e-12
    HMMPfam Zinc finger, A20-type 3.8e-12

    See the detailed result >

    AT1G51200.4

    Model type
    Protein coding
    Short Description
    A20/AN1-like zinc finger family protein
    Computational Description
    A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1).
    Link
    InterPro Scan - TAIR