K42634

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K42634

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42634

Determination of introduced cDNA(s)

  • J023107J18 - Rice Full-length cDNAs - Original: J023107J18

    full reading [+] show sequence

    Nucleotide sequence: J023107J18 - full reading 
    GACATTCACT AGTGGTTTGC TTCCAGTTCC TATCCAATCT CTGGTCTTCC 
    GGCAGGTCCC CGAAGAAGGA GCGGCGGCGA TGGCGGCGCC TGTGACGGTG 
    TACGGTCCGA TGATCTCGCC GGCGGTGGCG CGCGTGGCGG CCTGCCTCCT 
    GGAGAAGGAC GTGCCGTTCC AGGTCGAGCC GGTCGACATG TCCAAGGGCG 
    AGCACAAGTC CCCTTCCTTC CTCAAGCTCC AGCCCTTCGG CCAGGTCCCC 
    GCATTCAAAG ACAGCCTCAC CACCGTCTTC GAGTCGAGGG CTATTTGCCG 
    TTACATCTGT GACCAGTACG CCGACAGCGG TAACAAGACC CTCATGGGCA 
    GGAAAGAAGA TGGGGCGGTT GGCCGCGCTG CCATTGAGAA ATGGATAGAA 
    GCTGAAGGCC AGAGCTTCAA CCCACCGAGC TTGGCAATGG CATTCCAGCT 
    CGCATTTGCG CCGTTCATGG GTAGGGCCAC TGACATGGCC GTGGTTGAAC 
    AAAATGAAGC GAAACTTGTG AAGGTGCTCG ATGTTTACGA GCAGTGGCTG 
    GGGGAGAACC AGTATTTTGC AGGTGATGAG TTCTCGCTGG CGGACCTGGT 
    GCACATGCCC AACACAGATC TTCTTGTGCG CAAGACCAAC AAGGCAGGGT 
    TGTTCACGGA GAGAAAGAAT CTGGCGAGGT GGTGGGATGA GGTATCAGCT 
    CGTCCTTCAT GGAAGAAGGT TGTTGAGTTG CAGAATGTAC CACGGCCCTC 
    ATGAGGCTTC TTGTTTTTTC CCCTCTGAGC GTCTTGTGTT AGTTGCGTTA 
    AAGATTCGGT CTTGTTCAGT TGTTTGTATC ATTTGACAAA ATGTGCAAGC 
    TCTTCCTATG GGTCCCTAAT ATTGTGCTAC CATCTGTACC TTTTAGTTTG 
    GATAAGGTTG AATCTATTTT CAGGTTCTCA AGTTTACTTA CCT

    Gene models with high sequence identity

    1. AT3G03190.1 [+] show detail - glutathione S-transferase F11
      E-value: 1e-50; Score: 197.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glutathione S-transferase, N-terminal 2.7e-16
    HMMPfam Glutathione S-transferase, C-terminal 9.9e-16
    superfamily Glutathione S-transferase, C-terminal-like 8.4e-30
    superfamily Thioredoxin-like fold 1.9e-23
    ProfileScan Glutathione S-transferase, N-terminal 22.021
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 20.505
    HMMPanther GLUTATHIONE-S-TRANSFERASE THETA, GST 2.9e-64
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 2.9e-64
    Gene3D Thioredoxin fold 1.3e-21
    Gene3D Glutathione S-transferase, C-terminal-like 5.5e-35

    See the detailed result >

    AT3G03190.1

    Model type
    Protein coding
    Short Description
    glutathione S-transferase F11
    Curator Summary
    Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).
    Computational Description
    glutathione S-transferase F11 (GSTF11); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase phi 12 (TAIR:AT5G17220.1); Has 10837 Blast hits to 10834 proteins in 1289 species: Archae - 0; Bacteria - 5319; Metazoa - 1959; Fungi - 659; Plants - 879; Viruses - 0; Other Eukaryotes - 2021 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR