K42750

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K42750

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42750

Determination of introduced cDNA(s)

  • J013052J02 - Rice Full-length cDNAs - Original: J013052J02

    full reading [+] show sequence

    Nucleotide sequence: J013052J02 - full reading
    GGAGCCCGAT TGGCAGTTTG GCACCAGCAC CAGCAGCAGG AGCAGAGACA 
    GGTGAGAGGA GGAGGATAAA CGGAGGAGGC CGCGATGGGA ACCGTGCTGG
    ACTCCCACTT CCTGGCGCTC ACGGCCATCG TCACTGTGGG ATATCAGCTG
    GTGTTCTTCA TCATCACCGC GCTCCTGCGG TTCGATAAAG TCACTGATTT
    CGCAGGAAGT ACGAATTTCA TCATACTTGC AATCCTCACG CTAGCTTTGA
    AGGGAGCATG GCATTTCCGT CAGGTTGTAT TGACTGTGCT CGTTGTGATT
    TGGGGTCTTC GCTTAGGACT ATTCTTATTA ATGAGGATTC TTCAATGGGG
    AGAGGACAAA CGGTTTGATG AAATGCGCGA TAACTTGGGA AAACTAGCAG
    TTTTCTGGAT TTTCCAGGCT GTTTGGGTAT GGACTGTCAG CTTGCCTGTT
    ACAATTGTGA ACGCAAGTGA CAGCGATCCC TCAATTGAAG CCCGTGATAT
    TATTGGTTGG ATCATGTGGC TGATCGGGGC AGGTATGGAA GCAATAGCTG
    ATCAGCAGAA GCTTACGTTC AAGAATTCTC CGAGCAATCG TGGAAGGTGG
    TGTAATGTGG GTCTTTGGAG TTATACTCGC CATCCAAATT ACTTTGGCGA
    GATATTCCTT TGGTGGGGAA TATTTGTAGC ATCTACTCCA GTTCTCTCAG
    GAGCTGAATG GCTCGTGATC CTCGGACCTG TATTCCTGAC GCTCTTGCTT
    CTCTTCGTTA GTGGAATCCC ACTTCTGGAG GCTTCTGCTG ATAAGCGCTT
    TGGACAGAAC GAAGAATACC GCACGTACAA GAACACTACA AGTCCTCTTA
    TCCCACTACC ACCAGCTGTG TATGGAGCCC TGCCTGGATG GTTCAAGATG
    GGCTTCCTCT TCGAGCTCCC GCTCTACAAT CGTGTACCGC AACGTGATCC
    TGTCAGCTGA TGATATCAGT GATCTCTAGC GATTGTTGTG TACAATGTGT
    GTAGTATAAG ATACTTCCTC CGTTTCACAA TGGAAGTCAT TTTAGCATTT
    TCCACATTCA TATTGATGTT AATGAATTTA GATAGATATA TGTCTAGATA
    TATTAACATC AATATGAATA TGAAAAATGC TAGAATGACT TATATTGTAA
    AACGGAGGGA GGACATTGTT ATTGTCGATA AGTGATTTCT TTTCGCTTTG
    GTTATTAGGG CAGTGAAATT GTATCCACGT GAAAACATTA CGTTCCCTTC
    AGCTCTGTTT CT

    Gene models with high sequence identity

    1. AT1G73650.3 [+] show detail - Protein of unknown function (DUF1295)
      E-value: 9e-107; Score: 384.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF1295 3.1e-91
    ProfileScan 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal 9.52

    See the detailed result >

    AT1G73650.3

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1295)
    Computational Description
    FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1295) (TAIR:AT1G18180.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR