K42818

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K42818

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
whole plant flowering stage (PO:0007016)
  • premature (PATO:0000694)
    (Adult plant::Flowering::early)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42818

Determination of introduced cDNA(s)

  • J033123B14 - Rice Full-length cDNAs - Original: J033123B14

    full reading [+] show sequence

    Nucleotide sequence: J033123B14 - full reading 
    GGAGGCGACT CCAGAAAGCT TCCCCTCCGC GGTCCGCTCG CCTCCTCACG 
    GCGCCAAAGC AGCCAGGAAG AAGAAGAACC ACGCTGTTTC TAGGACGATT 
    CCTGGAACAG CCAACTTCTG AACCTCTATC TGCAAGACTG CAGACAGTAT 
    AATACTTCTT CCTGGTTGCA GCCGCCTCAG CGGAAAAACC AAATTCAGCT 
    TCATTCATGG GTTCCCCAAG CAAAACACGT CGGATGAAGC CATTGGGGAT 
    TCAGCTATAT GAGTGTGCCC GGGGGAGTCC TATCTCCTTC AGATCATGCC 
    AGGCTCTTGT ATTGATACTG ACGTTCTTAT CCTATGCTAG CTATCGTGCC 
    ACTAGGAAGA CTACAAGCAT TGTCAAGAGT GTTCTTGATC CTAAGACAGA 
    AAACCTAGGT ATGTTGCATT GGCCGAGCCA TCTGTATCTT CAGGATTTAA 
    GAGATGCACA GGGCAACATG ACGGCTCTCT ATAGCGGCTG GGCTCCGTTT 
    AATGCCGACG ATGGTACTGC ATTGCTCGGG GAGATCGACT TGGCATTTCT 
    CGGAGTATAT GCAATCGGCA TGTTCTTCGC TGGCCATTTG GGTGATCGGG 
    TGGATCTCAG GATACTTCTG ACCATCGGAA TGATAGGCAC TGGATTTTTC 
    ACTGCTGCCT TTGGTGCCGG CAACTGGCTC AACATACACA ACTTCTACTA 
    CTTTCTGGGT GTTCAGATGA TGGCTGGCCT GTTTCAGTCA TCCGGCTGGC 
    CATCTGTGGT TGCAGTTGTT GGTAATTGGT TTGGAAAGAG CAAAAGAGGG 
    CTGATAATGG GAATCTGGAA TGCTCATACA TCTGTGGGAA ACATATCTGG 
    TTCCTTAATT GCAGCTGCAA TGTTGAAGTT TGGATGGTCA TGGTCGTTTG 
    CAGTCCCTGG AGTGATGATC GCAGTCGTTG GGCTTGCAGT GTTTCTGTTC 
    TTGCCTGTCG GTCCGGAGAT GATTGGAATC GAGGAGGATA TCCATGAGAA 
    GGATGCTGAG AAGGATGACA TGAGTGCACC TCTGTTGGAA GAACGATCGG 
    CATCAAAAGA AAAGGCAGTC GGGTTCATTC AGGCTTGGAG AATTCCTGGT 
    GTAGCGCCAT TTGCTCTCTG CCTTTTCTTC TGCAAGCTTG TGGCTTACAC 
    ATTCCTGTAT TGGCTTCCGT TTTATATCAG CCACACAGCA ATCGGTGGAG 
    TGTACTTGTC AGACACCGCA GCCGGTGTAC TGTCAACTCT GTTCGACGTG 
    GGTGGCGTTG TCGGCGGCAT CCTTGCCGGC CACATCTCCG ACCGCCTCGA 
    CGCACGGGCG CTGACGGCGG CGAGCTTCAC GTTCTCGGCG ATCCCGGCGC 
    TCTTCTTCTA CCGCATATAC GGCAGCTTCT CGCTGTACTC GAACATCGCC 
    CTCATGTTCG TCACCGGGAT GCTCGTCAAC GGGCCGTACG CCCTCATCAC 
    CACCGCCGTC TCCGCCGACC TCGGCACGCA CAGCTCCCTG AACGGCAACT 
    CCAGGGCGCT CGCCACCGTC ACGGCGATCA TCGACGGGAC GGGGTCGATC 
    GGCGCCGCGG TCGGCCCGCT GCTGACGGGG TACATCTCTG CCAAGAGCTG 
    GAGCGGCGTG TTCACGATGC TCATGGCGTC CGCTTTCGTC GCGGGGCTGC 
    TCCTGTCGAG GCTGGTCATG GCGGAGATCT CCGCGAAGAT GGAGTCCCGG 
    AGGCCTGACG CTGCTGCTAG TGATCTGCCA GTGTCCTCCA TGGAACAATC 
    TTAGGCTCCA TTAGACACTT TGGAAATTGT GTCCCTGGTG AAATGCTGAG 
    AAATTTTACA AGCGAAAAAG CCTGAAAATG GAGACTTGAG AGGTGTGGCA 
    GGAAGAGCAA ACCCCTCACA AATTCCCTTT TTTTTTTACA CCTGAGGAGC 
    AAGGTGCTCT CTCCAGCCCC AGGATTGCAT CTTGGCTATG AGCGATTTCT 
    GTTGCTTGTG ATGTGTATAT GGAACTCCTA CCGTATGAAG TGATGATTGT 
    CAACTCTAGC TGTTGACAAA GGCGCGCGTG TGGAATGCGG GAGGTTTTCC 
    GGATTTCTGT ATAGCGAGTT ATAATCGGGC TCTTAAAGCT TGTGCGAGAA 
    TGCAGCAGAA GTGTTGGTTC CTATCAGATG CTAATGTAAT CTTGCTGATT 
    CACCGGTG

    Gene models with high sequence identity

    1. AT3G47420.1 [+] show detail - phosphate starvation-induced gene 3
      E-value: 0; Score: 653.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan MFS 26.052
    HMMPfam Major facilitator superfamily MFS-1 3.9e-36
    HMMPanther SOLUTE CARRIER FAMILY 37 MEMBER 2 (GLYCEROL-3 1.3e-269
    HMMPanther SODIUM-DEPENDENT PHOSPHATE TRANSPORTERS 1.3e-269
    superfamily Major facilitator superfamily, general substrate transporter 4.3e-62

    See the detailed result >

    AT3G47420.1

    Model type
    Protein coding
    Short Description
    phosphate starvation-induced gene 3
    Curator Summary
    Encodes a Pi starvation-responsive protein AtPS3.
    Computational Description
    phosphate starvation-induced gene 3 (PS3); FUNCTIONS IN: sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, transmembrane transport; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G30560.1); Has 26325 Blast hits to 26083 proteins in 2250 species: Archae - 498; Bacteria - 20836; Metazoa - 940; Fungi - 2597; Plants - 303; Viruses - 0; Other Eukaryotes - 1151 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR