K43202

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K43202

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K43202

Determination of introduced cDNA(s)

  • J023097D21 - Rice Full-length cDNAs - Original: J023097D21

    full reading [+] show sequence

    Nucleotide sequence: J023097D21 - full reading 
    GAAAAGCAAC GATCAGACTA CCACACTACA ATAGTATCAG TGAACTGCTA 
    TTGCCCTCCC AAGGGAAATA TACTAGTATG TCAACTTCCA TCCCTCTCCC 
    TTTCTTCTTC TCTCATGGTG TTGTGCATGC TAGGATAGGC CATCGTCCAA 
    TCCAGCCATC GGTTGGGCTT CTTTCTGCTG GTGCCCCGGC AAAAGTCTCC 
    TTCCGACGAC AAAGCAGTGC GCATCGACAT GCTGCACATG TTGTGTCCTC 
    AGAATCAATC ACTCCTGTAA AGGAAGTATC TAGCTTTGAG CCCTCTGTAT 
    GGGGGGATTT CTTTATCAAC TATGACCCAA AGCCACTACA GAGATCGGAG 
    GATTGGATGA TGGAAAAGGC TGATAAACTA AAACAGGACG TCCGTATACT 
    GTTTGAGACG CACAATGATA CAGCCAAGAA AATGCACTTA GTAGATGCAG 
    TTCAACGTCT TGGAATAGAT CACCTTTTCC AAGATGAGAT AAACAATGCA 
    ATAAGTGACA TCAAAGAAAG TGAATTCACT AGCTCTAGTC TCCACGAGGT 
    TGCTCTCCAC TTTCGCTTAC TTAGGGAGCA TGGCATTTGG GTATCTCCAG 
    ATGTATTCGA AAAATTCAAA GGAGAGGATG GGAGGTTCAT CAATACAATA 
    GCTGATGAAC CAAGGGCATT ATTAAGTTTG TACAATGCAG CTCACCTCCT 
    TGTCCATGAT GAGCCAGAAC TTGAAGAAGC TATGTCTTTT GCAAGGCACC 
    ACCTCGAATC AATGAGGGAC GGAAGTAGGC TCAAGGCCCC TCTAGATAAT 
    CAAATCAACC GTGCCCTACA CTTACCATTA CCGAGAACCT ACAAGAGAGT 
    TGAAATGTTG CATTACATGC TGGAGTACGG ACAGGAGGAA GAATGTATTG 
    TTGTTCTTTT AGATCTTGCA AAGCTGGAAT TTAACCTTCT GCAGCATGTC 
    CACTTGAAGG AGCTCAAAGC TTTTTCTCAG TGGTGGAAAG ATCTTTATGG 
    ATATGTCGAG CTAAGTCATG TTAGAGATCG TGCAGTGGAG TCATATCTTT 
    GGTCCTATGC GCTGTTCTAT GAAGAAAACT TAACACTCAC ACGGATGATC 
    CTTGCCAAGA TAATTGTATT CATTGTCCTT ATGGATGACA CATATGATGA 
    TCATGCCACC ATCGAGGAAT GCAGGAAGCT GAATGAAGCC ATACAAAGAT 
    GGGATGAAAG TGCTATCTCA TTACTACCAG AGTACATGAA AAAGTTCTAC 
    CGTGCACTGC TGAATTACTT CAGGGAGACT GAAGCTCAAG TAGAGGCCAG 
    TGACAAATAC CGGGTGACCT GCATGAAAAA AGAGTTCCAA AATCTATCCA 
    CGTATTACCT GCAAGAATTT GAATGGTTGC ATCAAAATTA CAAGCCAGCA 
    TTTAAGGAGC GGGTTGCTTT GTCAACCCTG TCCAGTACTG TTCCACTACT 
    CTGTGTGACT GCTGCAGTTG GCCAGGGTGA TGCAGTAACG AAGGAATCAT 
    TTGAATTGAC AACAGTACGT TCAAGTGCCG TTATAGCTTG TGCAAAGATT 
    ATGCGTTTCA TGAACGACAT TGCTGCATTC AAGTCTGGAA GAAAGAACAA 
    AGGAGATGCC GCAAACACAG TAGAGTGCTA TATCAATGAG CACAAGGTTA 
    CAAGCGAAGT TGCCTTAGAC AAGATCGAAT CAATGATTGA AAGTGAATGG 
    AGAACCCTGA ATCAGGTTCG TTGTGATCAT CAAAAGCAGT TCCATGTGGT 
    GCAACGAGTT ATGAATTTGG CCGTAGCAGT GCCATTCTTT TACGATAAGA 
    AGAAAGATGC ATATACATTT TCGAAGTATC ATCAGGGAAA TGTTGGGAAT 
    CTGTTTGTGA ATCCTGTCAC CCTTTAGAAC TGAGCTATCA ACAATGCAGC 
    AAACTATGTG CTTACACAAT GCTTATGTAA TTCTATCTCC ATCTTAAAAT 
    AAGTTCACTT TTGTACATAA ATCTGGACAT GGTCTATATC CAGACTCATG 
    TATAGAATGA AATTTATTTT GTGATGCAGG TAGCAATTCT TATGCGTATA 
    CTCTATGTGT ACGTTGGTAA TTAGTAAATA AAGATGGCAC CGTCCGAAGT 
    GCATTGCC

    Gene models with high sequence identity

    1. AT1G70080.1 [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
      E-value: 3e-66; Score: 250.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Terpenoid synthase 3.8e-105
    HMMPfam Terpene synthase, metal-binding domain 3.3e-61
    HMMPfam Terpene synthase-like 4.6e-51
    superfamily Terpenoid synthase 4.9e-105
    superfamily Terpenoid cylases/protein prenyltransferase alpha-alpha toroid 1.1e-60

    See the detailed result >

    AT1G70080.1

    Model type
    Protein coding
    Short Description
    Terpenoid cyclases/Protein prenyltransferases superfamily protein
    Computational Description
    Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14520.1); Has 1724 Blast hits to 1694 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1720; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR