K43403

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K43403

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K43403

Determination of introduced cDNA(s)

  • J033074L14 - Rice Full-length cDNAs - Original: J033074L14

    full reading [+] show sequence

    Nucleotide sequence: J033074L14 - full reading 
    GGGCGCTCTG CAACGCCACC GCTCCCCCGC TCGTCGCCGG CGCCGCCGCC 
    GGAGGAGAAG CCGACGAGAT CGGCGACGCG CGCAACCATC CCGCCGGTCT 
    CCCGCGACCC CGGATCTCTC CAACATGTCT ACTGTCAAGG GACAGACCAG 
    GAGGGAGAGG CCTAGAGGAG CTCGCCCTCA TGGATTGACG AAGCAGAAGA 
    GGCAGGAAAT AAAGGAGGCG TTTGATCTGT TCGACACAGA TAACTCTGGA 
    ACCATTGATG CCAAAGAGTT GAATGTTGCC ATGAGAGCCT TGGGATTTGA 
    GATGACAGAA GAACAAATTA ACCAGATGAT TGCTGATGTG GACAAAGATG 
    GTAGTGGATC CATAGATTAT GAGGAGTTTG AGCATATGAT GACTGCTAAG 
    ATTGGAGAGA GAGACAGTAA AGAAGAACTT ACGAAAGCAT TCAGTATTAT 
    CGACCAAGAT AAAAATGGGA AGATATCAGA TGTTGATATT CAGCGAATTG 
    CCAAGGAATT AGGTGAAAAC TTCACTTATC AAGAGATTCA AGAAATGGTG 
    CAAGAGGCAG ATCGAAATGG TGATGGTGAG ATAGATTTTG ATGAGTTCAT 
    TAGGATGATG AGGAGGACTG GATATGGTTA CTAGATGGAT GGACAGGATG 
    GTGCAGCGAG TGTATGATCT TGTGCAGTTG TTTTATGACC ACCACCGTGT 
    CTCTCCCTAA TGTATTTACC GCTGTAGTTT ACTCTGAACA AGAACAACCA 
    TGCTGTGTAC TGTGTACTTT AACTATGGTA ACATATTTAT GCACATGTTT 
    TCTATTCGAC G

    Gene models with high sequence identity

    1. AT3G50360.1 [+] show detail - centrin2
      E-value: 6e-68; Score: 254.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan EF-HAND 2 16.299
    ProfileScan EF-HAND 2 14.458
    ProfileScan EF-HAND 2 12.31
    ProfileScan EF-HAND 2 15.49
    HMMSmart Calcium-binding EF-hand 0.000000066
    HMMSmart Calcium-binding EF-hand 0.00000016
    HMMSmart Calcium-binding EF-hand 0.12
    HMMSmart Calcium-binding EF-hand 0.00000014
    HMMPanther CENTRIN-RELATED 4.5e-78
    HMMPanther CALMODULIN 4.5e-78
    superfamily EF-hand 3.4e-52
    HMMPfam EF-hand 0.00000002
    HMMPfam EF-hand 0.000000017
    HMMPfam EF-hand 0.0000000014
    Gene3D EF-hand-like domain 7.3e-43
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0

    See the detailed result >

    AT3G50360.1

    Model type
    Protein coding
    Short Description
    centrin2
    Computational Description
    centrin2 (CEN2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: centrin 2 (TAIR:AT4G37010.2); Has 32825 Blast hits to 20606 proteins in 1695 species: Archae - 1; Bacteria - 190; Metazoa - 13563; Fungi - 7187; Plants - 7027; Viruses - 2; Other Eukaryotes - 4855 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR