K43502

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K43502

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K43502

Determination of introduced cDNA(s)

  • J023013A03 - Rice Full-length cDNAs - Original: J023013A03

    full reading [+] show sequence

    Nucleotide sequence: J023013A03 - full reading 
    GACACAAAGC ACCTCGCTTA CGGTTTTTAG CACCCACACA CACTCCCGGC 
    CAACATCTCA CCACCCCCGA GAGAGAAGGC CGCGCGCCGC GCGCTGCTAG 
    TAGTGCTCGA TGGCGATGGT CCCCGCCGAC GCCGACGCCG CCGCCAAGCC 
    GCCGCCGGAC GTGGAGAAGC CGGACTACAG CTCCCAGAAC GGCGCCCCCA 
    ACTCGGCCGC CGCCGCCGCC GGGGGGGGCG GCGGCGGCGT GGTGGATTCG 
    GTGGTGGCGC GGTGGCGGCG GGAGGACATG CTCGACAAGA GCCCCCTCGC 
    GCTGCACGCG GCCGCCGCGG CGTTCGCCTT CGTCGCGCTC GTGCTCGTCG 
    CCTCCAACCA GCACGGGGAC TGGATGGAGT TCGACCGGTA CCAGGAGTAC 
    AGGTATCTGC TCGCGATTGC GGCACTGGCG TTCGCCTACT CGCTCGCGCA 
    GGCGCTGCGG CATGCTCTCC GGATGCGCCG CGGCGTCGAC CCCGTCCCGA 
    CGGCGTCCGG GCGGCTCCTC GATTTCGCCA GTGATCAGGT AGTCGCATAC 
    TTGCTGATGT CTGCTCTCTC TGCTGCTACA CCCATTACAA ATCGGATGAG 
    ATCTGCAGTA ATCAACCGCT TCACCGACAC GACTGCTGCT GCAATCAGCA 
    TGGCCTTCTT GGCATTTGTA TCCCTCGCCT TGTCAGCGAT AGTTTCTGGA 
    TACAAACTCT CCAAACAAAC CTACATGTGA AGCATCGTTC TATAGGAGTA 
    AAGCCCATTT CATGTGATCC ATTCATCCTG GAGATGCAAG AACTTATGAT 
    GACATGAAGG CGTAGTGGTG ATTGCTGTTA CCTATTGGTA GCTTACACAT 
    GTGTACATAA GCTTAGATGC AACATGCCTG AAGCTCTGAA GACCGCAATA 
    TTTGTTTAAA ATTTGTGCTA CCCTTTGACT ACCAGAACAA CATTTCTGCG 
    GTGATGAGAA GGTGAGAACT GCTTGTTCTG AAGATACAGA TAAGTGTACC 
    TATGTGAGCA TTTATTGTAG CATCTTTTGT ATGTGAGACT GTTATCATTT 
    TATTGTAGCG TCTAAGTTCA ATTTGTGTAC TAAATTTTTA GCGTGAGGAA 
    TTTATGGGCT AGATTTGTCA TTTCT

    Gene models with high sequence identity

    1. AT2G38480.1 [+] show detail - Uncharacterised protein family (UPF0497)
      E-value: 0.00000000000001; Score: 78.20

     

    InterPro Scan Digest

    See the detailed result >

    AT2G38480.1

    Model type
    Protein coding
    Short Description
    Uncharacterised protein family (UPF0497)
    Computational Description
    Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G36330.1); Has 221 Blast hits to 221 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 221; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR