K43517

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

UV signal::Others::positive

Original: K43517

Determination of introduced cDNA(s)

J033132F15 - Rice Full-length cDNAs - Original: J033132F15

full reading [+] show sequence

GGCGTTTGAG CGACGGAGAG AGTTGCATAT AGAGAGAGAG AGAGAGAGAA 
TGATGGATTA GCTAGCTAGC TTGTTCCTCC GTCGGCTCGG GCGGTCCTCT 
TCGAATTGGA TCTTCTTCTT CTACTCACAT ACACACACAC TCGATCTTGT 
GCCTCTGCAG CACACGGTAG TGTTGGTTGA TGGCAAATCC TAGTCGTCAT 
AGCAGGTCAG GTGATGGTAA TGGTTGGGCT AGCCCCGAGC GGACGATGGT 
GTGGAGGACG GAGCTCAAGA AGAAGCAGAT GAAGCAGGTT GTGGTGGGCG 
TGGTGTACTA CCTGTGCCGG CAAGACGGGC AGCTGGATCA CCCCCATTTC 
GTCCACGTCC ACGTCCCCTC CGACTCCGAC TCCGATCATC CGCGGCCGCG 
CCTCCACCTC CGCGACTTCA TCGCCCGCCT CAGCGACCTC CGCGGCGCCG 
CCATGCCCGC CGCCTACTCC TGGTCCGCCA AGACCACCTA CAGGAGGAAC 
GCCGGCTACG TCTGGCAAGA CCTCACCGCC GACGACCTCA TCCCCGCGCC 
ATCAACCAAC CATGAGGAGT ATGTCCTCAA GGGCTCCCCG CTGCTCCACC 
ATAACTCCAA TACGCCCGCG CAGCACAGGA GGTGCATGAC ATCCTTTGAC 
CTCGCCGACT ATCACCGCAC CACCGACCCT GTCCCTGTCC CGGCGGCGGC 
GCAGCAGTCC TTAATTGGCA TTGATGAGAT ATCACCTCCA CCGTCTTCAA 
GCAGCCCCGA CGACACCACC ACCCAGCTTG TTACCCTGAA GCAGAAGCAA 
CAGGAGGAGG ATGGCTGCAC GCCCCAGCAA CAAGCGGCGA CGACACCGGC 
AGGGCGGATG CGGACGTCGG CGATGCTGAT GAAGCTCATC TCGTGCGGCG 
CCTCCTCCAT CAAGGAGCTG CAGGGCCAAG CACAATCACA ACGCTGCCGT 
GCTACTGCTT GGCATAACAA CAAGCCGGAC ATCATGGACC ACCGTGACTA 
CTTCAGTGGA AGCTTGCTGG ACAACAACAC AACCACCCAC CCTATCGACC 
TCACCCTCAG GAGATCATCC TCTTGCAATG CCCACAGGGG ACAGAGTAGT 
AGGCTTGGCG TGGTGGATCA GGATGGCGTC CCGAGGAGGC AACAGCTGCA 
CGCCAAATCG ACGGCGGCGC GCATGGACAG CCCGGAGACA GATCAGATCA 
GATCATAGAG GAGGGGATCA GCAAGCTAAG CTAAGCTAAG CTAATGCTCT 
TGTCAGGCAA CTCATCCATC GAATGATACC AAAATGTTTC TTCTGTTACT 
AGTACTACAC TAGTTAGTTA TTTTATTTCC CTTTTTTTTT CATTTCAACA 
AGTTAGTTTG TTCGTTTGAG CGCGCGATTC GATCAGTTGG TGTGAAAACG 
AAAACGAAAA CGATGGAACA CACGT

Gene models with high sequence identity

AT3G46110.1 [+] show detail - Domain of unknown function (DUF966)
E-value: 5e-24; Score: 109.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF966	7.9e-48
HMMPfam	Protein of unknown function DUF966	4.6e-24
HMMPIR	Uncharacterised conserved protein UCP031043	6.8e-145

See the detailed result >

AT3G46110.1

Model type: Protein coding
Short Description: Domain of unknown function (DUF966)
Computational Description: LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 195 Blast hits to 168 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR