K43517

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K43517

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Original: K43517

Determination of introduced cDNA(s)

  • J033132F15 - Rice Full-length cDNAs - Original: J033132F15

    full reading [+] show sequence

    Nucleotide sequence: J033132F15 - full reading
    GGCGTTTGAG CGACGGAGAG AGTTGCATAT AGAGAGAGAG AGAGAGAGAA 
    TGATGGATTA GCTAGCTAGC TTGTTCCTCC GTCGGCTCGG GCGGTCCTCT
    TCGAATTGGA TCTTCTTCTT CTACTCACAT ACACACACAC TCGATCTTGT
    GCCTCTGCAG CACACGGTAG TGTTGGTTGA TGGCAAATCC TAGTCGTCAT
    AGCAGGTCAG GTGATGGTAA TGGTTGGGCT AGCCCCGAGC GGACGATGGT
    GTGGAGGACG GAGCTCAAGA AGAAGCAGAT GAAGCAGGTT GTGGTGGGCG
    TGGTGTACTA CCTGTGCCGG CAAGACGGGC AGCTGGATCA CCCCCATTTC
    GTCCACGTCC ACGTCCCCTC CGACTCCGAC TCCGATCATC CGCGGCCGCG
    CCTCCACCTC CGCGACTTCA TCGCCCGCCT CAGCGACCTC CGCGGCGCCG
    CCATGCCCGC CGCCTACTCC TGGTCCGCCA AGACCACCTA CAGGAGGAAC
    GCCGGCTACG TCTGGCAAGA CCTCACCGCC GACGACCTCA TCCCCGCGCC
    ATCAACCAAC CATGAGGAGT ATGTCCTCAA GGGCTCCCCG CTGCTCCACC
    ATAACTCCAA TACGCCCGCG CAGCACAGGA GGTGCATGAC ATCCTTTGAC
    CTCGCCGACT ATCACCGCAC CACCGACCCT GTCCCTGTCC CGGCGGCGGC
    GCAGCAGTCC TTAATTGGCA TTGATGAGAT ATCACCTCCA CCGTCTTCAA
    GCAGCCCCGA CGACACCACC ACCCAGCTTG TTACCCTGAA GCAGAAGCAA
    CAGGAGGAGG ATGGCTGCAC GCCCCAGCAA CAAGCGGCGA CGACACCGGC
    AGGGCGGATG CGGACGTCGG CGATGCTGAT GAAGCTCATC TCGTGCGGCG
    CCTCCTCCAT CAAGGAGCTG CAGGGCCAAG CACAATCACA ACGCTGCCGT
    GCTACTGCTT GGCATAACAA CAAGCCGGAC ATCATGGACC ACCGTGACTA
    CTTCAGTGGA AGCTTGCTGG ACAACAACAC AACCACCCAC CCTATCGACC
    TCACCCTCAG GAGATCATCC TCTTGCAATG CCCACAGGGG ACAGAGTAGT
    AGGCTTGGCG TGGTGGATCA GGATGGCGTC CCGAGGAGGC AACAGCTGCA
    CGCCAAATCG ACGGCGGCGC GCATGGACAG CCCGGAGACA GATCAGATCA
    GATCATAGAG GAGGGGATCA GCAAGCTAAG CTAAGCTAAG CTAATGCTCT
    TGTCAGGCAA CTCATCCATC GAATGATACC AAAATGTTTC TTCTGTTACT
    AGTACTACAC TAGTTAGTTA TTTTATTTCC CTTTTTTTTT CATTTCAACA
    AGTTAGTTTG TTCGTTTGAG CGCGCGATTC GATCAGTTGG TGTGAAAACG
    AAAACGAAAA CGATGGAACA CACGT

    Gene models with high sequence identity

    1. AT3G46110.1 [+] show detail - Domain of unknown function (DUF966)
      E-value: 5e-24; Score: 109.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF966 7.9e-48
    HMMPfam Protein of unknown function DUF966 4.6e-24
    HMMPIR Uncharacterised conserved protein UCP031043 6.8e-145

    See the detailed result >

    AT3G46110.1

    Model type
    Protein coding
    Short Description
    Domain of unknown function (DUF966)
    Computational Description
    LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 195 Blast hits to 168 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR