K43810

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K43810

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K43810

Determination of introduced cDNA(s)

  • J023149A15 - Rice Full-length cDNAs - Original: J023149A15

    full reading [+] show sequence

    Nucleotide sequence: J023149A15 - full reading 
    GACTTTTCTT TTACGCTTCT CCCCTCCTCC CTACTACTGC TGGTGACTAG 
    TTCTACTACC ACTCAAAAAC AACAAACATA GCTAGTGATC TGATTTGCAT 
    TCAGGTCGAG TGAACAACCC AACCAGCAAA AGATCGGAGG AACAGAAGGG 
    TTTGGTTGGT TGTTCGGAGG AAGGAGCATT TCGTTTCGTT TCGGATTGAT 
    TCCCGGGTTT AACATATTAT CATCCATGGC CCACGACTTG CACGACGACC 
    TGGAGTTCGT CTCCGGCGAC GACGACGACT ACTACTTGGA GTTCGATCAC 
    GATCCCGGCC ATGGCTTCCA CACCTCCGCC GCCACTTCAG CCTCCCAGAC 
    GAACAAGCAG ATGGACGATA CCGTGGGAAC GGTTGAATTA TAGCAGGAAT 
    CAGTATCGCG AGATGAGACT AAGGCAATAT AAGAATTATG AGAACCTTAC 
    TATGCCGCGT GATGGACTAG AAAAGGAATG CAAACAAGTG GAGAGAAAAG 
    ACACATTCTA TGATTTTCAT TTGAATACAA GACTTGTCAA GTCAACAATA 
    GTTCATTTTC AGGTACCGAT TTCCTCTGAC CTGTCATTCA GATACTTGTA 
    TGCATAAGAA AGCTGGCGTA TGCATTTGGG TGACCGCTTT ATAGAAAGTT 
    TTGAATTAAC AATGCTAGTT AACTTTATGA TTTGTTTGCA TAGCACCCTA 
    TGAATGCTAT ACTATATTTT GTTCATCAAT TTTTATACAT AACTAGATAC 
    CAACAGTCTA ATTTCTAACC ACAATTATTT ATGGTAATAG AAATGGAAGA 
    AGTTTCCCTC TCTTTCTTAA ATAAAAAAGT CCACAAGCTT AAATAAAAAT 
    TCATCTATGT GGTATCAGCA TCTATCATTA TTATGCACAT GATGTTTATC 
    TAGCTTATTC TTAGGTTTGT TATGATTAAC AAATAGTCTC CAAAATTTCG 
    TACTGTTATG CATACCATTT GCATGTGCAC AACCTGCATC ACTATATTCT 
    GTTTAATAAA GTGTACTGTC TGTACCTTTC TGCCCTTTTG TTTATATAGA 
    CATAATATTT ACTGCAGGTT GTATGATGAG TTGAATCAAA ATATGCTAAA 
    CTGAGATAGT TTTCGATACG AGCAAATTAA CCCATGATAT TAGGGCAGAT 
    GCAATATCTT ACTTCCCAGG TGGATGGTCA TTCTCAGCAG TCGGCGCAAT 
    TATACACGTG GAATATGGTA TGATAGGATG TTTTATGATA GGCAGAACTG 
    TTAAATAAGT CACCTCTGAG TTTTGTTGCA GGTTGGAGAT GAGAGTTCAG 
    AAATACATTA TGCATCATCA TTTTTGGTTG TACTTTATGC ATTAATAGTG 
    TATGAAGATT GCTCATCTTG TGCCGTGTAT GTTGTTTAAC TGCATGTTCT 
    TGATTTGATT TTGTTGTGTT GCTAACTGTT CTGGGTAGCT AAAAACTACT 
    AAGTGATACT AAATTCTTAA TTAAAAAATA ACAGTGAACA GTCCATTTTA 
    TCCTTTACCC ATTAATAGCT CGATAGCTCC TTGCTGAACA TAAAGGATAA 
    CTTTTGGTTG GCAGTAGCAT CTGGATGTCT GCAAATTATA ATATACTTGC 
    CAGAAACTGA TTCTTCTAGT CTTGTCTGCT TACTGGCACT GCTCTAGAGG 
    TTCTGTGAGG AGGCACTTGG TACTAGTACA TTAGAGGAAT TGAAAAAGAA 
    AATTCTTATT TCTGAACCAT TTAGGTAGTG CCAGTTGAAA TTTTTACTGT 
    AAAAACTTGT CATTGACTTG CACGATCACA TCTTGTAGTA CCATTTGCAT 
    TCTATCCTAT CAATTCCTCT GAAAATGTAA ATGACCATGT TGTTGTGGAC 
    ATCTCTGCAG CTGAGGAACC TGCTGTGGGC TACTTCCAAG CATGACGTGT 
    ATCTGATGCA GAACTACTCT GTCATGCACT GGTCTTCCCT GCTCCAGAGA 
    GGAAAGGAAG TGCTCAATGT CGCGGGCCAA CTCGCTCCCT CTCAGAATGT 
    CCGGGGAGCT ATGCCGTTGT CGCGGGTGCA GATCAGTACC ATGGCGGTGA 
    AAGGCAACCT CATGGTGGCC GGTGGTTTCC AGGGTGAACT CATCTGCAAG 
    TATGTTGATA AACCTGGAGT GGCGTTTTGT ACGAATCTGA CCGGGAACAA 
    CAATTCCATC ACGAATGCCG TGGACATCTA CCAGGCACCA AATGGCGGTA 
    CTCGAATTAC GACCGCGAAC AACGACTGCG TAGTCAGAAC TTTCGACACC 
    GAGAGATTCA GCCTCATTAG CCACTTTGCC TTTCCATGGT CGGTCAATAA 
    TACGTCGGTG AGCCCTGACG GCAAGCTGCT CGCGGTTCTT GGTGACAGCT 
    CCGACTGCCT GATCGCCGAT TCACAATCTG GCAAGGAAAT GGCGAGGCTG 
    AAGGGTCACC TGGACTACTC GTTCTCGTCG GCGTGGCACC CCGACGGCCG 
    TGTGGTCGCC ACGGGGAACC AGGACAGGAC GTGCCGGGTG TGGGACGTGC 
    GCAACATGTC GCGGTCGGTG GCGGTGCTGG AGGGCCGGAT CGGCGCCGTC 
    AGGGGGCTCC GGTACTCGCC GGACGGCCGC TTCCTCGCCG CGTCGGAGCC 
    CGCCGACTTC GTCCACGTCT ACGACGCCGC CGCGGGCTAC GCCGACGCGC 
    AGGAGATCGA CCTGTTCGGG GAGATCGCCG GCGTCGCGTT CAGCCCCGCC 
    GGGAATAATG GCGGCGGCGG GGAGGCGCTG TTCGTCAGCA TCGCCGACCG 
    CACGTACGGC AGCCTGCTCG AGTTCCACCG GCGCCGCCGC CATGGCTACC 
    TGGACTGCTA CGTCTGATCG CCGCCGCCGC CGCCATGTCC GCCGCGGCAG 
    TGCATCGCGT GCAAAGCTGT AAGCTTTGAA AAGGTGCAAC GCAACACGGC 
    GTTTTCGCGC GCTTTTTTTT CTTGCGCTGC CGCGAGCCGA GACGTCAGTT 
    GTTTTTTTTT CTTTATTTAA AACTTTTGGC ACGTTGCTGT TTTACATTGT 
    ATTTTTTTTG TATTGTACGG TGCAGTGTAG TGCTACATAG TACAGTATAT 
    ATTTGGAGGC GGATATAACC TTAGAGCCAA ATTAGAGCCA AATGACCGTC 
    TATAAAAATA TAAATCAAGG TGAAACATAC CGTCCGTCTG TGAAAATAAA 
    TATAAATAGA CTGGGATAGA CTTTGTAGCT TTGTGTTGTA CGAAAGTTCA 
    TTAATTTGGT AATGTACGTA AAGAACACTT TTGATGCTTT ACAGTTAGTG 
    TTGACTGCGT GCTAATGGAG ACTGGATTAT TCATGCCACG CTTCTGTAAT 
    TGATTTCTCC AGATATTGGA TCAGCATAAC CTTCTATATA CTGTTTAATT 
    TATCCG

    Gene models with high sequence identity

    1. AT1G78070.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 1e-124; Score: 444.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40-repeat-containing domain 0
    HMMPanther PTHR22847:SF50 2.29999935665394e-14
    superfamily WD40 repeat-like-containing domain 6.5e-33
    HMMSmart WD40 repeat 53.9999977351167
    HMMSmart WD40 repeat 5.09999882439977e-08
    HMMSmart WD40 repeat 0.229999998797964
    Gene3D WD40/YVTN repeat-like-containing domain 1.79999754022378e-29
    ProfileScan WD40 repeat 2 0
    HMMPanther PTHR22847 2.29999935665394e-14
    PatternScan WD40 repeat, conserved site 0
    HMMPfam WD40 repeat, subgroup 0.00017
    HMMPfam WD40 repeat, subgroup 210
    Coil coiled-coil 0

    See the detailed result >

    AT1G78070.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G36070.1); Has 25796 Blast hits to 12397 proteins in 585 species: Archae - 64; Bacteria - 7254; Metazoa - 7661; Fungi - 5235; Plants - 2447; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR