K43810

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K43810

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K43810

Determination of introduced cDNA(s)

  • J023149A15 - Rice Full-length cDNAs - Original: J023149A15

    full reading [+] show sequence

    Nucleotide sequence: J023149A15 - full reading
    GACTTTTCTT TTACGCTTCT CCCCTCCTCC CTACTACTGC TGGTGACTAG 
    TTCTACTACC ACTCAAAAAC AACAAACATA GCTAGTGATC TGATTTGCAT
    TCAGGTCGAG TGAACAACCC AACCAGCAAA AGATCGGAGG AACAGAAGGG
    TTTGGTTGGT TGTTCGGAGG AAGGAGCATT TCGTTTCGTT TCGGATTGAT
    TCCCGGGTTT AACATATTAT CATCCATGGC CCACGACTTG CACGACGACC
    TGGAGTTCGT CTCCGGCGAC GACGACGACT ACTACTTGGA GTTCGATCAC
    GATCCCGGCC ATGGCTTCCA CACCTCCGCC GCCACTTCAG CCTCCCAGAC
    GAACAAGCAG ATGGACGATA CCGTGGGAAC GGTTGAATTA TAGCAGGAAT
    CAGTATCGCG AGATGAGACT AAGGCAATAT AAGAATTATG AGAACCTTAC
    TATGCCGCGT GATGGACTAG AAAAGGAATG CAAACAAGTG GAGAGAAAAG
    ACACATTCTA TGATTTTCAT TTGAATACAA GACTTGTCAA GTCAACAATA
    GTTCATTTTC AGGTACCGAT TTCCTCTGAC CTGTCATTCA GATACTTGTA
    TGCATAAGAA AGCTGGCGTA TGCATTTGGG TGACCGCTTT ATAGAAAGTT
    TTGAATTAAC AATGCTAGTT AACTTTATGA TTTGTTTGCA TAGCACCCTA
    TGAATGCTAT ACTATATTTT GTTCATCAAT TTTTATACAT AACTAGATAC
    CAACAGTCTA ATTTCTAACC ACAATTATTT ATGGTAATAG AAATGGAAGA
    AGTTTCCCTC TCTTTCTTAA ATAAAAAAGT CCACAAGCTT AAATAAAAAT
    TCATCTATGT GGTATCAGCA TCTATCATTA TTATGCACAT GATGTTTATC
    TAGCTTATTC TTAGGTTTGT TATGATTAAC AAATAGTCTC CAAAATTTCG
    TACTGTTATG CATACCATTT GCATGTGCAC AACCTGCATC ACTATATTCT
    GTTTAATAAA GTGTACTGTC TGTACCTTTC TGCCCTTTTG TTTATATAGA
    CATAATATTT ACTGCAGGTT GTATGATGAG TTGAATCAAA ATATGCTAAA
    CTGAGATAGT TTTCGATACG AGCAAATTAA CCCATGATAT TAGGGCAGAT
    GCAATATCTT ACTTCCCAGG TGGATGGTCA TTCTCAGCAG TCGGCGCAAT
    TATACACGTG GAATATGGTA TGATAGGATG TTTTATGATA GGCAGAACTG
    TTAAATAAGT CACCTCTGAG TTTTGTTGCA GGTTGGAGAT GAGAGTTCAG
    AAATACATTA TGCATCATCA TTTTTGGTTG TACTTTATGC ATTAATAGTG
    TATGAAGATT GCTCATCTTG TGCCGTGTAT GTTGTTTAAC TGCATGTTCT
    TGATTTGATT TTGTTGTGTT GCTAACTGTT CTGGGTAGCT AAAAACTACT
    AAGTGATACT AAATTCTTAA TTAAAAAATA ACAGTGAACA GTCCATTTTA
    TCCTTTACCC ATTAATAGCT CGATAGCTCC TTGCTGAACA TAAAGGATAA
    CTTTTGGTTG GCAGTAGCAT CTGGATGTCT GCAAATTATA ATATACTTGC
    CAGAAACTGA TTCTTCTAGT CTTGTCTGCT TACTGGCACT GCTCTAGAGG
    TTCTGTGAGG AGGCACTTGG TACTAGTACA TTAGAGGAAT TGAAAAAGAA
    AATTCTTATT TCTGAACCAT TTAGGTAGTG CCAGTTGAAA TTTTTACTGT
    AAAAACTTGT CATTGACTTG CACGATCACA TCTTGTAGTA CCATTTGCAT
    TCTATCCTAT CAATTCCTCT GAAAATGTAA ATGACCATGT TGTTGTGGAC
    ATCTCTGCAG CTGAGGAACC TGCTGTGGGC TACTTCCAAG CATGACGTGT
    ATCTGATGCA GAACTACTCT GTCATGCACT GGTCTTCCCT GCTCCAGAGA
    GGAAAGGAAG TGCTCAATGT CGCGGGCCAA CTCGCTCCCT CTCAGAATGT
    CCGGGGAGCT ATGCCGTTGT CGCGGGTGCA GATCAGTACC ATGGCGGTGA
    AAGGCAACCT CATGGTGGCC GGTGGTTTCC AGGGTGAACT CATCTGCAAG
    TATGTTGATA AACCTGGAGT GGCGTTTTGT ACGAATCTGA CCGGGAACAA
    CAATTCCATC ACGAATGCCG TGGACATCTA CCAGGCACCA AATGGCGGTA
    CTCGAATTAC GACCGCGAAC AACGACTGCG TAGTCAGAAC TTTCGACACC
    GAGAGATTCA GCCTCATTAG CCACTTTGCC TTTCCATGGT CGGTCAATAA
    TACGTCGGTG AGCCCTGACG GCAAGCTGCT CGCGGTTCTT GGTGACAGCT
    CCGACTGCCT GATCGCCGAT TCACAATCTG GCAAGGAAAT GGCGAGGCTG
    AAGGGTCACC TGGACTACTC GTTCTCGTCG GCGTGGCACC CCGACGGCCG
    TGTGGTCGCC ACGGGGAACC AGGACAGGAC GTGCCGGGTG TGGGACGTGC
    GCAACATGTC GCGGTCGGTG GCGGTGCTGG AGGGCCGGAT CGGCGCCGTC
    AGGGGGCTCC GGTACTCGCC GGACGGCCGC TTCCTCGCCG CGTCGGAGCC
    CGCCGACTTC GTCCACGTCT ACGACGCCGC CGCGGGCTAC GCCGACGCGC
    AGGAGATCGA CCTGTTCGGG GAGATCGCCG GCGTCGCGTT CAGCCCCGCC
    GGGAATAATG GCGGCGGCGG GGAGGCGCTG TTCGTCAGCA TCGCCGACCG
    CACGTACGGC AGCCTGCTCG AGTTCCACCG GCGCCGCCGC CATGGCTACC
    TGGACTGCTA CGTCTGATCG CCGCCGCCGC CGCCATGTCC GCCGCGGCAG
    TGCATCGCGT GCAAAGCTGT AAGCTTTGAA AAGGTGCAAC GCAACACGGC
    GTTTTCGCGC GCTTTTTTTT CTTGCGCTGC CGCGAGCCGA GACGTCAGTT
    GTTTTTTTTT CTTTATTTAA AACTTTTGGC ACGTTGCTGT TTTACATTGT
    ATTTTTTTTG TATTGTACGG TGCAGTGTAG TGCTACATAG TACAGTATAT
    ATTTGGAGGC GGATATAACC TTAGAGCCAA ATTAGAGCCA AATGACCGTC
    TATAAAAATA TAAATCAAGG TGAAACATAC CGTCCGTCTG TGAAAATAAA
    TATAAATAGA CTGGGATAGA CTTTGTAGCT TTGTGTTGTA CGAAAGTTCA
    TTAATTTGGT AATGTACGTA AAGAACACTT TTGATGCTTT ACAGTTAGTG
    TTGACTGCGT GCTAATGGAG ACTGGATTAT TCATGCCACG CTTCTGTAAT
    TGATTTCTCC AGATATTGGA TCAGCATAAC CTTCTATATA CTGTTTAATT
    TATCCG

    Gene models with high sequence identity

    1. AT1G78070.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 1e-124; Score: 444.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40-repeat-containing domain 0
    HMMPanther PTHR22847:SF50 2.29999935665394e-14
    superfamily WD40 repeat-like-containing domain 6.5e-33
    HMMSmart WD40 repeat 53.9999977351167
    HMMSmart WD40 repeat 5.09999882439977e-08
    HMMSmart WD40 repeat 0.229999998797964
    Gene3D WD40/YVTN repeat-like-containing domain 1.79999754022378e-29
    ProfileScan WD40 repeat 2 0
    HMMPanther PTHR22847 2.29999935665394e-14
    PatternScan WD40 repeat, conserved site 0
    HMMPfam WD40 repeat, subgroup 0.00017
    HMMPfam WD40 repeat, subgroup 210
    Coil coiled-coil 0

    See the detailed result >

    AT1G78070.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G36070.1); Has 25796 Blast hits to 12397 proteins in 585 species: Archae - 64; Bacteria - 7254; Metazoa - 7661; Fungi - 5235; Plants - 2447; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR