K44101

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K44101

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Original: K44101

Determination of introduced cDNA(s)

  • J023010G06 - Rice Full-length cDNAs - Original: J023010G06

    full reading [+] show sequence

    Nucleotide sequence: J023010G06 - full reading 
    GGGCGTTGGT GGCCATCACT GAGCTTATCA TTGGAGCGGC CTCAGCTGAG 
    CTCCCAACCA GCTGCAGCAG CAGCAGCAGC AGGGGCAGCC TCAGTTCACC 
    GCCCGGCGCC GCCGCATCCA TCTGCATTGC TCGCTCGGAG GCCTCAGTAA 
    TCATTGTTGG AGAAAATGGT TGCAGAGGCC TTTACAGTAG ATTTGAATGA 
    ACCTCTTGTA TTTCAGGTTG GACATTTAGG TGAGCAGTAT CAGGAATGGG 
    TTCACCAACC AATTGTTAGC AAGGAGGGGC CAAGACTTTT TGCCAACGAT 
    GTCTTAGAGT TCTTAACACG CACGGAATGG TGGGCAATTC CTCTTATCTG 
    GTTGCCTGTT GTATGTTGGT GCCTGACTAA ATCAGTCGAA ATGGGACACA 
    CACTTTCAGA AGTAGCTCTG ATGGTTGTGT TTGGAATATG CCTATGGACA 
    TTGATCGAGT ATATAATGCA TCGATTCCTG TTCCACATAA ATACTAAAAG 
    TTACTGGACA AACACAGCAC ATTACCTTCT TCATGGAATT CATCACAAGC 
    ACCCGACTGA CGGCCTTCGA CTTGTCTTTC CACCAGCAGC TGCAGCTATC 
    TTGTGCTTTC CGTTCTGGAA TCTAATCAGG CTAATTACTA CTCCGACTAC 
    AACTCACGGC GTGTTTGGAG GCGGCCTGTT GGGTTATGTG ATGTATGACT 
    GCACACACTA CTATCTGCAT CATGGGCAGC CGTCATCTGA TCCAGGAAAA 
    CACCTCAAGA AATACCATCT GAACCATCAC TTCAGAATCC AAAACAAGGG 
    GTTCGGAATA ACATCGACGC TGTGGGATCA TGTGTTTGGT ACATTGCCCT 
    CGACGAAAAC CATCGACAAG AAGAGCTCTT GACTTGCGCT GCATTTTGCA 
    AAAAGCCAGA AATGGAGGCA AAGATAAGCA TGTATTATGT TCTCCAATGT 
    CCACCTCCTC AAGCCAAATC CTGTTCAGGT GTTCTAGATT GATTTGCTCC 
    TGCAGAATCC CCATGATTGC ATGATTGATG ACAGGCCTGA TGGATGATGA 
    ATCACTGATC GATTTCTAGT TCTTATTCTC TGAAGATGAA CCGAAGATCC 
    AAGATTGGTC CATGAGATTA TCCTTTCTTG ATTTGGCCCT CCGAGAATAG 
    ATTCCTGTGC AATCTAGTCA GTAGTTGTTC AGGTCATGTA AACGTACGGT 
    AAGAAATTTA TGTGCAGAGG GTTTTCCAGT TTATCCTATG CATTTGACCT 
    CTGGTCATGT ATTGATTCTG AGACAAAGTG TAGTGATCGC TTGATGATAC 
    TAGTACACAT TGCTGCCTTC TTTTTTGTCC TGTAAAAGAT TTATTATTGG 
    CAGCAATGGA TGGTAGAGAG GGCAATCTGC TTCTTAGTTT TG

    Gene models with high sequence identity

    1. AT2G34770.1 [+] show detail - fatty acid hydroxylase 1
      E-value: 6e-104; Score: 374.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther FATTY ACID HYDROXYLASE 7.9e-100
    HMMPfam Fatty acid hydroxylase 7.7e-11

    See the detailed result >

    AT2G34770.1

    Model type
    Protein coding
    Short Description
    fatty acid hydroxylase 1
    Curator Summary
    encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.
    Computational Description
    fatty acid hydroxylase 1 (FAH1); FUNCTIONS IN: fatty acid alpha-hydroxylase activity, catalytic activity; INVOLVED IN: very long-chain fatty acid metabolic process, negative regulation of programmed cell death; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: fatty acid hydroxylase 2 (TAIR:AT4G20870.1); Has 784 Blast hits to 784 proteins in 354 species: Archae - 0; Bacteria - 388; Metazoa - 105; Fungi - 140; Plants - 78; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR