K44106

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K44106

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Original: K44106

Determination of introduced cDNA(s)

  • J033100F04 - Rice Full-length cDNAs - Original: J033100F04

    full reading [+] show sequence

    Nucleotide sequence: J033100F04 - full reading 
    GACCCACATC CGCCGCCGCC GCCGCAGAAT CGGAAGCAAT CCGCCGCGAG 
    TCGCGACCAT TTCTTGCGAG TAGTAGTAGA GGGGAGAGTG AGTGAGGGGC 
    GTGCTGCAAT GGCGACTGAG GAGGTTGTCC CTGAGGTTCC GGTGACCGAG 
    GTGGAGGCTG CCGCGGCGGA GGAGGCCGTC GAGGAGACGA CGGCGGCGGA 
    GGAGAAGGCC GCCAAGCCGG CGAAGGAGAA GAAGAAGGCC GGCAGGCCGC 
    CGAAGGAGAA GAAGGAGGCC AAGCCGGCGA AGGAGAAGAA GGTGAAGGAG 
    GCCAAGGCCA AGAAGCCCCG CGTCGCCGCC GCCCACCCGC CGTACGCCGA 
    GATGATCATG GAGGCGATCG TGGCGCTGAA GGAGAGGACT GGATCGAGCT 
    CCCAGGCCAT CGGCAAGCAC ATCCATGCCA ACCATGGCGC CAACCTGCCG 
    CCCAACTTCC GCAAGCTCCT CTCCGGCAAC CTCAAGAAGC TCACCGCCGC 
    CGGCAAGCTG GCCAAGGTCA AGAACTCCTT CAAGCTCTCC TCCACCCGCC 
    CTGCCGCTCC GGCCGCCGCC GACGCCAAGC CCAAGGCCGC CCCCGCCACG 
    AAGCCCAAGG TCAAGACCAC CAAGGCCGCG AAGCCGGCTG CCAAGGCGAA 
    GGCTCCTGCT ACCACCAAGG CCGCGAAGCC GGCGACCAAG ACCAAGATCA 
    AGGTCGCCGC CGCGCCGGCG GCGAAGCCCA AGGCGTCTCC CAAGGCGAAG 
    GCCAAGACCG CCACCTCGCC GGTGAAGCCC CGCGGCCGCC CTGCCAAGTC 
    CGCCAAGACC TCTGCCAAGG ACTCGCCTGC CAAGAAGGCG GCGCCGGTGG 
    CTGCCAAGAA GAAGGCGGCG GCGACCAAGA AGAAGGCGTC GGTGGCTGCG 
    GCGCCGGCTG CTCGCAAGGG TGCGGCGAGG AAGAGCATGA AGTAGAGGTC 
    GCCGGCGATG ATGCCACCTG GATTGGATTG CCCACCTTTT GATCTCCACA 
    GGCGACAGCG CCATTAGCAT CATCATCAGC AAGTAGTAGC AGAAATTGTG 
    TTCTGTAAAT GCTTGTTCGT CTTAGTTCGT TTCACCTCCC TCTAGGCGGT 
    ATCATCATCT TCTCGCCTGT AATGATAGGA TCCCATCATC CTCAAAAACC 
    ATAATACAAA TATCTATTTC GTCTT

    Gene models with high sequence identity

    1. AT2G30620.2 [+] show detail - winged-helix DNA-binding transcription factor family protein
      E-value: 2e-09; Score: 60.50

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Histone H5 8.7e-15
    FPrintScan Histone H5 8.7e-15
    FPrintScan Histone H5 8.7e-15
    FPrintScan Histone H5 8.7e-15
    FPrintScan Histone H5 8.7e-15
    HMMPanther HISTONE H1/H5 6e-24
    HMMPfam Histone H1/H5 2.7e-21
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 3.7e-18
    HMMSmart AT hook, DNA-binding motif 4.1
    HMMSmart Histone H1/H5 6.5e-28
    HMMSmart AT hook, DNA-binding motif 1
    superfamily "Winged helix" DNA-binding domain 1.1e-22

    See the detailed result >

    AT2G30620.2

    Model type
    Protein coding
    Short Description
    winged-helix DNA-binding transcription factor family protein
    Computational Description
    winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT1G06760.1).
    Link
    InterPro Scan - TAIR