K44543

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K44543

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
whole plant flowering stage (PO:0007016)
  • premature (PATO:0000694)
    (Adult plant::Flowering::early)
sporophyte vegetative stage (PO:0007134)
  • increased speed (PATO:0000303)
    (Adult plant::Growth::fast)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K44543

Determination of introduced cDNA(s)

  • J033121G11 - Rice Full-length cDNAs - Original: J033121G11

    full reading [+] show sequence

    Nucleotide sequence: J033121G11 - full reading
    GGGCGCAACC TCTCTCGACG TGCTAATGGC GGCGGCGGCG GCGGACTTCG 
    CGGCGAGCAA GCGGGCCATG GCCTACGCGC TCTGCAAGCA CCTCAGCCTC
    GATCCGAATA CAATATCCAG TACAAGTATT GAAGAGAGTG ATATTGCCAC
    CCTGTTCTCA CATATTGTGA AATCGAGTGA AGATGAGGTA CTGAAATGGG
    TTGAATTTTC CAGCAATTTT GTTGGAAAAT GTGGAGAACA GCATGCATTG
    CTTGGTAATC TGAATCAAGA CTTGTCCCAG AAATCAGTTC TGTTGGGTAA
    TGGTTTTAAA CCATCAGTTG CTGATATTGT TGTGTTTGCA ACCATACAAG
    TTTTTGTGAG TCATCTTGGT GAAAACGAGT TGCAGAAATA TCCACATGTA
    TTGCGGTGGA TGGACTATAT CCAGAACATC GTTGATTTTG GCACAACAGT
    ACAAAAGGTT AACTTGACCA AATCTGTCTT CGATCCACCT TCTCATCCAA
    AGAAGGCAGA TAAAGGTGAC ACTGATCCAA GTTCAAAGAA AGTTGTTTCA
    GGACAGAAGA ATGTGGGCAA ATCGGATGCA AATGTTGATT CCAAGAAAGC
    TGCACCAGAG AATAAAGCTC CTGAGAATAA GGCAAATCCT ACTCCAGCAA
    AAAATAACAA ACCTTCTGGG GATAAAAAGA AAGCCCAGGA GAAATCTGCA
    GGAAAACCAA ATGAGGGAGT TGCGGATAAA GCTCCACAGA AAACTGCAGA
    AAAGGACTCA GAATGCAATG TCAGTATCCT GAATATACAG GTTGGCCTTA
    TTCGCAAAGC ATGGAAGCAC CCATCTGCTG ACAGCCTCTT GGTTGAGGAG
    ATAGATTTGG GAGATGGCAA TGTGCATCAA GTTGTTAGTG GGCTTGCCAA
    GTTCTTCAGC CCAGAGGAAC TTGTTAATCG GCATGTTGTA TTAATCACGA
    ATGTGAAGCC TGGGAAGCTG CGAGACGTAA TGTCTGCCGG ATTGGTCTTG
    TGTGCTTCAA ATCAAGATCA TACAGTTGTA GAGCCATTGA TTCCTCCAGA
    AGGAGCTAAG CCTGGAGAGC GTATTTCATT TGCAGGGTTT GATGGGAAGC
    CAGAAGATGT TCTTAATCCG AAGAAGAAAC AGCTCGACAA GATCACACCG
    GATCTTCACA CTGATGGAAA TGGAATTGCA ACATACCGAG GGGTACCCTT
    CACTACATCT GCTGGTCCAT GTAGATCTTC TGTTCCTAAT GCGAGCATTA
    AGTGAGCAGT TATTTTAACA GATTCCAAAC ATTGTTGTGC TATAACACAT
    GCTAGGTGGA TGTACTATTT CATCTTGCAT CTTATTACAT GCCCTATCAA
    CTGTTGTCAG CGTAGCGTCC ATCTACTGTG ATATCTAATA GAAAATTTTG
    ACTAGCCAAT GTGAAGAACA TTTGTATTAC CTTGCACCAA ATGCAAAATC
    CTTCATGAAC ACGGTTGTTT TCAGGCAGGA TTTCTGATGA GTC

    Gene models with high sequence identity

    1. AT2G40660.1 [+] show detail - Nucleic acid-binding, OB-fold-like protein
      E-value: 1e-105; Score: 380.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily Nucleic acid-binding, OB-fold-like 3.6e-46
    superfamily Glutathione S-transferase, C-terminal-like 0.00000023
    HMMPanther ENDOTHELIAL-MONOCYTE ACTIVATING POLYPEPTIDE I 4.4e-21
    HMMPanther ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHION 4.4e-21
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 10.498
    ProfileScan tRNA-binding domain 28.747
    Gene3D Nucleic acid-binding, OB-fold 4.9e-46
    HMMPfam tRNA-binding domain 7.1e-26

    See the detailed result >

    AT2G40660.1

    Model type
    Protein coding
    Short Description
    Nucleic acid-binding, OB-fold-like protein
    Computational Description
    Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: tRNA binding; INVOLVED IN: tRNA aminoacylation for protein translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), tRNA-binding domain (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 6072 Blast hits to 6060 proteins in 2115 species: Archae - 244; Bacteria - 4267; Metazoa - 483; Fungi - 217; Plants - 163; Viruses - 1; Other Eukaryotes - 697 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR