K44751

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	desaturated green (PATO:0001272) (Cauline leaf::Color::pale)
	rosette leaf (PO:0000014)	increased width (PATO:0000600) (Rosette leaf::Shape::wide) desaturated green (PATO:0001272) (Rosette leaf::Color::pale)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	desaturated green (PATO:0001272) (Stem::Color::pale)
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K44751

Determination of introduced cDNA(s)

J033073M17 - Rice Full-length cDNAs - Original: J033073M17

full reading [+] show sequence

GGGCTTCTCT CTCTCTCTCT CTCGGTCTCC CACCTCCTCA TCCCGCTCGC 
CCGCTCGCCG ACACGGCGCA AATCCAAGAA CCCCCCACGC CGTGCGTGGA 
CACCTCGCCT CGCCTCGTCC TCGCCCATCT CTCTCCTTTT GCCCGCATCC 
GCGGCCTCGC CTCGTAGTCC CCGCCGCATC TCGCCATTCC GCTACGCGCC 
CAAGCTACTG CTAGTAGTAC TATCTGCTCC CCCGTGCGTG GTCGGGTCAG 
GTGGGTCGGC CGCGAGATCC CGCCATGGAG GTCAGGACAG TAAAAGTTAG 
CAACATTTCA TTGAATGCTT CAAAAAGGGA GATCACAGAG TTCTTCTCTT 
TCTCTGGAGA TATAGAATAT GTTGAGATGC AAAGTGAATC TGAAAGGTCA 
CAGCTTGCTT ATGTTACATT TAAGGACTCA CAAGGAGCAG ATACTGCTGT 
GCTTCTCTCA GGGGCAACAA TTGTTGACCG TTCTGTCGTC ATAACTCCAG 
TTGTGAACTA TCAACTGCCT CCTGATGCAC GCAAACAATC CGCAGGAGAG 
AAATCTTCCT CTGCTGAATC TGTAGTCAGG AAGGCAGAGG ATGTTGTGAG 
CAGCATGTTG GCAAAGGGCT TTGTCCTCAG CAAGGATGCT CTGAACGTAG 
CAAGATCTTT TGACGAGCGT CACAACATAC TGTCCAATGC TACAGCTACT 
GTCGCATCTC TAGACCGCCA GTATGGCGTG AGTGAAAAGA TCAGTTTGGG 
CCGTGCAATT GTTGGTAGCA AGGTCAAGGA GGTGGATGAT CGTTATCAGG 
TGTCAGAACT CACAAAGTCC GCTTTAGCGG CTGCGGAGCA GAAAGCCAGC 
ATTGCAAGCT CTGCTATCAT GAATAACCAG TATGTCTCAG CTGGTGCTTC 
CTGGTTAACA AGCGCATTTG GCATGGTAAC CAAGGCGGCA GGTGACATGA 
GCTCCATGAC CAAAGATAAG GTAGACAGGG CCGAAGAGGA GAGGAAAGCG 
ATCATGTGGG AAGAGAGGAA TGGGCTTGTA AGTGATTATG CCAAGATCCA 
TCTTGATGAA CCCTCTTCAT GGGAGCCTGC AGTTCTTCCG TTGGAATCTG 
TGGATGAGCA GAAGCTCCAG GCTGTGTGAT CTGCACAATC CAATGGTGGT 
CGTTTCTCTG CACGTCATTC TTTTGTTCAT GTCCAATATA GAAGATTGTT 
TTTCACCGCT GCACGGTAGC AAAAATATTG AGCTTATTGC CTATAGTATG 
ATGTAAATTT TAGAAATTCC CCATGTGTTT TCTTCCAGCT TTGTTATAGA 
CCACTGAAAG GCTTACTTGT TCAGTGTTAG ACATGGAAAT GAAAGTTGTT 
CCAGACTTCC AGGCATACCT CTTGTTATGG TAGAACATGT TTCTGTGAGT 
TATCTCAGAA CTATTTGTGC TCTGATATTC TGAAGCTACA TGTGTAAGGC 
CCAAATCTGG GAAATAATCA AGGTCAAAAT GAAATGCAGA CAATATTTCC 
TAATCCT

Gene models with high sequence identity

AT4G17720.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
E-value: 7e-75; Score: 278.00

InterPro Scan Digest

Program	Description	E-value
superfamily	RNA-binding domain, RBD	0.000000000012
HMMPanther	ALDO/KETO REDUCTASE	4.3e-72
HMMPanther	Aldo/keto reductase	4.3e-72
HMMSmart	RNA recognition motif, RNP-1	0.00000021
Gene3D	Nucleotide-binding, alpha-beta plait	0.0000019
HMMPfam	RNA recognition motif, RNP-1	0.0000003
ProfileScan	RNA recognition motif, RNP-1	11.179

See the detailed result >

AT4G17720.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G46870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR