K45202

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K45202

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K45202

Determination of introduced cDNA(s)

  • J013067H07 - Rice Full-length cDNAs - Original: J013067H07

    full reading [+] show sequence

    Nucleotide sequence: J013067H07 - full reading 
    GGTCACCTTC TTCCTCCCCA CGCCGCGCTC TCCTCCCCTC TTAAACCACT 
    AGCGCCGCCT CCGCGCTCTC TCCTGCCTCC TCTCCTCGCC TCTCCTCACC 
    CTGTGGGTTG GTCGGCGTGT AGCTGCTTGC TTTGCTCTCA CTGCCGGGGC 
    TCGATCTGCT TGCTCTGCAG AAATTCTTTC CAATTCATTG CTTCTTGTGG 
    CCTGTGGGCA CCTCTACAAT TTGATTTCAG ATGGATTGCT GCTTTATGTT 
    CAGAAAAAAA CAACCTGTTG AAGGTGATGA TGGTGAACAT AGAGTGAAGA 
    TATTTTCTTA CAGTGAGTTG AGAAAGGCTA CCCATGATTT TAGTGGGGCA 
    AATAAGATTG GAGAGGGTGG TTTTGGCTCT GTGTTCAGGG GAGTGCTTAG 
    AGATGGGACA ACCGTTGCCG TAAAGGTGCT GTCTGCTACT TCAAGACAAG 
    GCGTCCGAGA GTTCTTGACT GAACTTACAG CAATTTCTGA CATCAAGCAT 
    GAAAACCTCG TCACACTTAT TGGTTGCTGT GCTGAAGGAT CTCATAGGAT 
    CCTTGTTTAC AATTATCTTG AGAACAACAG TCTTGCACAG ACATTGCTAG 
    GATCTAGGGG TAGCAACATC CGGTTCGATT GGAGGACCCG TGTAAAAATT 
    GCTGTGGGTG TTGCTCGTGG AATTGCATTT TTACATGAGG AAATTCGCCC 
    TCCGATTATC CACCGTGACA TAAAGGCGAG CAACATTCTT CTTGACAAGG 
    ACCTCACCCC AAAAATTTCT GATTTCGGAT TGGCAAGGCT CCTTCCACCC 
    AACGCAACTC ATGTGAGCAC CCGAGTTGCA GGCACATTAG GATACCTGGC 
    ACCTGAATAC GCTATCCGAG GCCAGGTGAC AAAGAAATCC GACATCTATA 
    GCTTCGGTGT TCTTCTACTG GAAATCGTTA GCGGCAGATG CAACACCAAC 
    ACAAGATTGC CTTATGAAGA TCAATTTCTT CTCGAAAGGA CATGGGTACG 
    CTACGAGCAA GAACGCCTGG CTGAGATCAT CGATGCTGAC CTGGGGAATG 
    ACCTGGACGT CGACGAGGCA TGCCGGTTCC TGAAGATTGG CCTGCTATGC 
    ACACAGGACG CAATGGCGCG CCGCCCCAAC ATGAGCACCG TCGTCAGGAT 
    GCTCACCGGG GAGAAGCACT TCTCGGTGCA CCGGATCACC AGGCCGGCCA 
    TGATCACCGA CTTCGCCGAC CTCAAGGTCA GCAGCAGCCA GCAGAAGGAG 
    AACGAGACAA CACGGTCATC CAACATGAGA TCGTTCAGCA CCACTGATGA 
    AACGGAGCCT TTCTCATCGT CAGAGACGCC GACGCAGACG TCTATCTGAA 
    AAAAAAAAAC AAGAAGAAGA ACTGGAAATG TGGAGACAGG ACTAGTGTTT 
    TTTTTGTGTT TGTATATTAT TGCTCCGAAA GGGGATAGGA TTACGTTCAA 
    TTTTTTTTTC TCTTTTTGGA GAGAGTTTCG TGTTTGTTTG ATTTTTGTGA 
    CGAGGAGATG TTTAAGATAG GCAGCGTATT GCTTCTCGAT CTGGGTGTAA 
    ATATCTCGAA ATGAAGATGT TCAAAGCCTC AAAGATAAGC TCTGCACGAT 
    TCACATC

    Gene models with high sequence identity

    1. AT1G16670.1 [+] show detail - Protein kinase superfamily protein
      E-value: 2e-126; Score: 449.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Serine-threonine/tyrosine-protein kinase 1.4e-46
    HMMPanther RECEPTOR-LIKE SERINE/THREONINE KINASE 5.5e-181
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 5.5e-181
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 4.1e-80
    ProfileScan Protein kinase, catalytic domain 38.068
    Gene3D no description 8.3e-24
    Gene3D no description 4.9e-52
    HMMSmart Serine/threonine-protein kinase domain 5e-29
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.2e-33

    See the detailed result >

    AT1G16670.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G09010.1); Has 119178 Blast hits to 117668 proteins in 4361 species: Archae - 113; Bacteria - 13232; Metazoa - 43958; Fungi - 10262; Plants - 33662; Viruses - 406; Other Eukaryotes - 17545 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR