K45251

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K45251

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K45251

Determination of introduced cDNA(s)

  • J033036C04 - Rice Full-length cDNAs - Original: J033036C04

    full reading [+] show sequence

    Nucleotide sequence: J033036C04 - full reading
    GAGTTTCCAC CTTTTCCCTC TCTTCCTCCG CTTATTAAAA GGCGGCGTCC 
    CTCCCCGTGG TGCTCGCCGC CGTATTCAAG CGGAGGAAGA GAGAGAGAGA
    GAGAGAATCA AGGCAGTAGT CGTCTTCCTC TCCTCTCGCC GCCGCATCCG
    ACCGGAGAAA GATCCCTTCT TTCCCTCCTC CAAGCCCGCC TCGGTATCCA
    GAGATGGAGA CCTCGGCGGC GGCGGCGCCC AATGGCGGCG CGGCGGCGGC
    GGAGCAGCAG CAGCGGCGTC GGCTGCCGGA CTTCCAGCAG TCGGTGAGGC
    TCAAGTACGT GAAGCTGGGG TACCACTACC TCATCTCCCA CGGCATGTAC
    CTGCTGCTGT CGCCGCTGAT GGCGCTGGTG GCCGTGCAGC TCTCCACCGT
    GTCCCCGGGC GACATCGCCG ACCTGTGGGA GCAGCTCCGC TTCAACCTCC
    TCTCCGTCGT CGCCTGCTCC ACCCTCCTCG TCTTCCTCTC CACCCTCTAC
    TTCCTCACCC GCCCCCGCCC CGTCTACCTC CTCGACTTCG CCTGCTACAA
    GCCCGACCCC CAGCGCAAGT GCACCCGCGA GACCTTCATG CGCTGCTCCA
    GCCTCACCGG CTCCTTCACC GACGCCAACC TCGACTTCCA GCGCAAGATC
    CTCGAGCGCT CCGGCCTCGG CGAGGACACC TACCTCCCTC CCGCCGTGCT
    GCGCGTCCCG CCCAACCCGT GCATGGACGA GGCCCGCAAG GAGGCCCGCA
    CCGTCATGTT CGGCGCCATT GACCAGCTTC TTGAGAAGAC GGGTGTGAAG
    CCCAAGGACA TTGGTGTGGT TGTCGTCAAT TGCAGCTTGT TCAACCCGAC
    GCCGTCGCTG TCCGCCATGG TTGTGAACCA CTACAAGCTG AGGGGGAATG
    TCATCAGCTA CAACCTCGGC GGGATGGGGT GCAGTGCCGG CTTGCTGTCC
    GTCGATCTCG CCAAGGACTT GCTGCAGGTG CACCCAAACT CGTACGCGCT
    GGTGGTCAGC ATGGAGAACA TCACGCTCAA TTGGTACTTT GGCAACAACC
    GGTCGATGCT CGTGTCGAAT TGCCTGTTCC GGATGGGCGG CGCCGCCATC
    CTGCTGTCGA ACAGGCGGTC CGACCGCCGG AGGTCCAAGT ATGAGCTTGT
    GCACACCGTG CGCACGCACA AGGGCGCCAA CGACAAGTGC TTTGGCTGTG
    TCACCCAGGA GGAAGACGAG ATCGGCAAGA TCGGCGTGTC GCTCTCCAAG
    GACCTGATGG CGGTGGCCGG AGACGCGCTG AAGACGAACA TCACCACCCT
    CGGGCCGCTC GTGCTCCCGT TGTCGGAGCA GCTGCTCTTC ATGGCCACAT
    TGGTTGCCAA GAAGGTCCTC AAGATGAAGA TCAAGCCATA CATTCCCGAT
    TTCAAGCTGG CATTTGAGCA TTTCTGCATC CATGCCGGTG GCCGTGCCGT
    GCTGGATGAG CTGGAGAAGA ACTTGGAGTT GACTGACTGG CACATGGAGC
    CATCTAGGAT GACACTGTAC CGGTTTGGCA AAACATCGAG CAGCTCACTC
    TGGTATGAGC TGGCGTACAC CGAGGCGAAG GGGAGGATCA GGAAGCGGGA
    CAGGATCTGG CAGATTGCAT TTGGATCTGG TTTCAAGTGC AACAGCGCAG
    TCTGGAAGGC GCTGCAAACA GTGAATCCAG CGAAGGAGAA GAACCCCTGG
    ATGGATGAGA TTGACAACTT CCCGGTTGAA GTTCCAAAGA TATCAAAGGT
    TGGAAATGCA TGACATGAAA TGCCTTGTTT GTCTCAAGAG TAGTAAAAAG
    TATGGTGGGT TGAGTGGCAT TGTGCATTGG CATTGGTAGG GCAGGAAGTT
    CATCTTCAGG GTTCTAAATC CATTTGCAAT TGTTCAAGAG TTCTTTGGTT
    TTCAGTTGTA GCATCTGTGA GGGGAACTTT AAAAAGAAAA CTGTAGCTGA
    TTCAATTAGG TAGAAAAAGG GTGTGTTTTC TTCACTTAGG GCTGTCTGAT
    AATGCTGTAT TTATTCAGAT TGGAGAAAAC AATTGGAGTC TTCATGTGAC
    GTTTATTCAT CGTTACCTGA TTGTGATTGC CCTTGTAGCA CTGTCACATT
    CTCATTAAAT TTATCTCATT AAATTGATTG GTTT

    Gene models with high sequence identity

    1. AT2G26640.1 [+] show detail - 3-ketoacyl-CoA synthase 11
      E-value: 0; Score: 810.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam FAE1/Type III polyketide synthase-like protein 1.4e-146
    HMMPfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal 2.6e-08
    HMMPIR Very-long-chain 3-ketoacyl-CoA synthase 0
    superfamily Thiolase-like 2.9e-97
    Gene3D Thiolase-like, subgroup 8.8e-58
    Gene3D Thiolase-like, subgroup 5.2e-23

    See the detailed result >

    AT2G26640.1

    Model type
    Protein coding
    Short Description
    3-ketoacyl-CoA synthase 11
    Curator Summary
    Encodes KCS11, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
    Computational Description
    3-ketoacyl-CoA synthase 11 (KCS11); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: response to cold, response to light stimulus, response to osmotic stress; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 2 (TAIR:AT1G04220.1); Has 3664 Blast hits to 3650 proteins in 908 species: Archae - 0; Bacteria - 1588; Metazoa - 0; Fungi - 2; Plants - 1914; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR