K45318

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	root (PO:0009005)	present in greater numbers in organism (PATO:0000470) (Root::Number::many)
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K45318

Determination of introduced cDNA(s)

J013119K22 - Rice Full-length cDNAs - Original: J013119K22

full reading [+] show sequence

GACTCCACTC CATCACCTCC TGCTTGAGCA AGCAAGCAAG CAATCGCTGC 
AGCCAACTGT TCGACCAGAG CGAGTTAGCC ATGGCGTACA GAGTTCTTGA 
GGTGACCCTC CACTCGGCGA GGGACCTGAA GAACGTCAAC TTCATCTCGC 
GCATGGAGGT GTACGCGGTG GCGACCATCT CCGGCGACCC GCTGACGCGG 
CAGTGCACGC CGCCGGACCC CTACGGCGGC CGCCACCCGG CCTGGAACGC 
CACGCTCCGC TTCACCGTCC CGCCTACCGC CGCCTCCGCC GCCGGCTGCC 
TCCACGTCCT CCTCCGCGCC GAGCGCTCCC TCGGCGACCG CGACATCGGC 
GAGGTCATCA TCCCGCTCGC CGACGTCCTC TCCGGCCCCT ACGACCTCGG 
CGCCCGCCCG CCGCAGTTCG CCTCCTACCA GGTCCGCAAG CTCCATCGCT 
CCGAGACCCG CGGCGTGCTC CACCTCTCCT ACCGCCTCGG CCCCGTCGTC 
GCGCCGCAGT CCGTCTTCGC CTACCCGGCG CCGCCGCCGC CGCCGCCGCA 
GCTGTTCGAG ACCGCTCCTC CCTCGCCGCC TTACGTTCCC CCACCACCGG 
ACGCCTACCT TCGTAAACCG TCGCCGCCGT CTCCACCACC CGCCAAGCTG 
TCGCCGCCGC CACCGCCACA GACACAGACA CAGCCGCTGG CAAAGCCGCC 
GGCGCCGGCG ACGCCGTCGC GAGCTGGCGG GCACGTGGCG GCGCTGGCGC 
CACCTGCGGT GGCGAAGGCC GACAGGCACG TGTCGACGCC GTCACCGGCG 
AAGGCCGACT GGCAGATGGT GGGCACGCCG ACGGCGACGA AAGGGGCGAG 
CAAGCATGGC AGCCTGGAGT TCGAACGGGG GCTCAACGCC GGGCTGGTCG 
GCGGCGCCAT CGGCGGGATG CTGGTCGGCA CCGAGATGGT GTCCGACGCG 
GCGTTCTACC ACGCCGGCTA CAGGGCCGGG CTCGCCGACC GCGACGGATG 
GGCCGTCTAC TAAACCGTCG TCGCCATGGC TGCAGGTGCA GCGCCATGCA 
TGGTCGGTCG GCGAAGATGC TTAGCTGAAT AAAAGTCTCT GGTTTTCTTT 
TTTTGGCCTT TTGAGATTAG CTCAATAAAA GTCGATGAAA TTTACTTTGG 
CTGAGAGTTT GTAACTCTTC CTCTTCGGCT AGTGAATTAA TCGACTTGTT 
GTATATATTT TGTTACTGGT TATGATGTAA TATATGGCCA CGAAAATCC

Gene models with high sequence identity

AT3G16510.1 [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
E-value: 0.000000000000001; Score: 81.60

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	0.000001
HMMSmart	C2 calcium-dependent membrane targeting	0.000015
superfamily	C2 calcium/lipid-binding domain, CaLB	1.8e-16
HMMPfam	C2 calcium-dependent membrane targeting	0.0000013

See the detailed result >

AT3G16510.1

Model type: Protein coding
Short Description: Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description: Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT4G15755.1); Has 24270 Blast hits to 15902 proteins in 854 species: Archae - 8; Bacteria - 1639; Metazoa - 9119; Fungi - 5377; Plants - 5202; Viruses - 451; Other Eukaryotes - 2474 (source: NCBI BLink).
Link: InterPro Scan - TAIR