K45618

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K45618

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K45618

Determination of introduced cDNA(s)

  • J013070L16 - Rice Full-length cDNAs - Original: J013070L16

    full reading [+] show sequence

    Nucleotide sequence: J013070L16 - full reading 
    GACACCATAC ATCCCGCGCC TTCTTCCTCC TCAGCTTTGC CGAGACCTCG 
    TTGCCTCAAG CCGTGTTGCG TGCTGCATGC TCTGAATTGA AGAACTCTCT 
    TGGGCCTGAC CAGGTATATC AGAAGTGGAG AAGAAGATTG GAAGCATGAG 
    GGAAATGGGA GAGAAGAGGA GGCGTGGACA CCTTAACCCT GCTGGTTTTG 
    CAGGAGGGTT GCATGATCAT GAGGAGAAGA AGAACGAGGA GCATAAGCTA 
    GACATGAGTG GCATGTCCAT GGATGCCCTC CCACACCTCA CCATGTCTCT 
    TGGTCAAGTC ACCATCTTGG ATCTCTCTAA CAACAATCTT GAGAGCATCC 
    CGGAGTCAAT AATCGCTCGG CTGCTGAACG TGGTGGTGCT GGACGTGCGG 
    TCCAACCAGC TGAAATCGCT GCCCAACTCC ATCGGCTGCC TCTCCAAGCT 
    CAAGGTCCTC AACGTCTCCG GCAACCTGCT CGAGTCCCTC CCCAACACCA 
    TCGAGGAGTG CCGTGCGCTG GAGGAGCTGC ACGCCAACTT CAACGAGCTG 
    ACGAAGCTGC CGGACACGCT GGGGTTCGAG CTGCACAGCC TCCGGAAGCT 
    GTCGGTGAAC TCCAACAAGC TGGCGCAGCT CCCCTCCTCG ACGTCGCACA 
    TGACGGCGCT CAGGGCGCTG GACGCCCGGC TCAACTGCCT CCGCGCGCTC 
    CCCGACGGGC TCGAGAACCT CGCCAACCTC GAGGCGCTCA ACGTCAGCCA 
    GAACTTCCAG TTCCTCCGGG AGCTCCCCTA CGCCGTCGGC CTCCTCGCCT 
    CGCTCCGGGA GCTCGACGTC AGCTACAACT CCATCGCCGC GCTCCCGGAC 
    TCCATGGGCT GCCTCACCAA GCTCGCCAGG TTCAGCGCCG TCGGCAACCC 
    GCTGGTGTCC CCGCCCATGG ACGTCGTGGA GCAGGGCCTG GACGCCATGC 
    GCGCCTACCT CACCGCGAGG ATGAACGGCG GCGACGGCAA GAGGAAGAAG 
    AAGGCGTGGC TGCCCAAGCT GGTCAAGTAC AGCACCTTCA CGGCGAGGAT 
    GACGCCCGGG CGCACCAGGG TGCACGAGAA CACGGAGGGC CTCCTCATGT 
    CGGACTACCG GTCGCTCAAC GGCATCGCCT CGCCGAGGTT CCTCACCATG 
    CTCTCGCCGC GCCGCCTCTT CTCGCCGCGG AGGAATTCGC CCAAGCATTG 
    TTGATATGGC CGATCCGATC CGCCTCTGCC TACTCTGTGT ACTGGTTGCC 
    TGTTTGCTTC AGGGGTGTAC TTCAGATGAT GTCATGCTCT CGTACTTAAT 
    TAGGATAGAT ATGATGATGC TGCTGCTGCT AGCTGCTACC GCTGCTGCAA 
    GGTGTGTATA TGTTCTCATG AAGAGGTTTG TAGCTTCGCA TACAGTATAT 
    AGCTCTACAA TTTTTGTTTG ACGTAAAAAA TGCTGTAGTA CAATCTAGAG 
    CATTGATGTA CATAACAAGG GTAATTTTCT TCCATGTCTG TTTGTTAAGC 
    ACC

    Gene models with high sequence identity

    1. AT2G19330.1 [+] show detail - plant intracellular ras group-related LRR 6
      E-value: 1e-97; Score: 353.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Leucine-rich repeat 0.0033
    HMMPfam Leucine-rich repeat 0.42
    HMMPfam Leucine-rich repeat 0.13
    HMMPfam Leucine-rich repeat 0.43
    Gene3D no description 2.1e-39
    superfamily L domain-like 2.5e-42
    FPrintScan Toll-like receptor, leucine rich repeat-containing 6.1e-05
    FPrintScan Toll-like receptor, leucine rich repeat-containing 6.1e-05
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9.2e-113
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9.2e-113
    HMMSmart no description 27
    HMMSmart Leucine-rich repeat, typical subtype 0.07
    HMMSmart no description 280
    HMMSmart Leucine-rich repeat, typical subtype 21
    HMMSmart no description 2.7
    HMMSmart Leucine-rich repeat, typical subtype 0.044
    HMMSmart no description 1.2
    HMMSmart Leucine-rich repeat, typical subtype 160
    HMMSmart no description 21
    HMMSmart Leucine-rich repeat, typical subtype 3.4
    HMMSmart Leucine-rich repeat, typical subtype 21
    HMMSmart no description 130
    HMMSmart no description 4.3
    HMMSmart Leucine-rich repeat, typical subtype 0.079

    See the detailed result >

    AT2G19330.1

    Model type
    Protein coding
    Short Description
    plant intracellular ras group-related LRR 6
    Curator Summary
    Encodes PIRL6, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
    Computational Description
    plant intracellular ras group-related LRR 6 (PIRL6); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 7 (TAIR:AT4G29880.1); Has 63918 Blast hits to 28732 proteins in 1043 species: Archae - 35; Bacteria - 6419; Metazoa - 27911; Fungi - 2141; Plants - 23572; Viruses - 21; Other Eukaryotes - 3819 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR