K45950

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K45950

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
  • abnormal (PATO:0000460)
    (Root::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Original: K45950

Determination of introduced cDNA(s)

  • J013101M12 - Rice Full-length cDNAs - Original: J013101M12

    full reading [+] show sequence

    Nucleotide sequence: J013101M12 - full reading 
    GTTTGGATTC CTCCTCCTCC TGCTGCTGCT CTCTCTCCTC CAAGGCTCCA 
    ACACATCCTG GTCCAGAGAG AAAAAGGGGA GATATTTTTT TGGGGGCGCA 
    TGATTCGATC CCTTGTTGTT TGCTGTTGTT GCCTTGCTGC GCAAAGATTT 
    GGTCCTTTCT CGGTCTGTTT CTTGGCCTGT TCAGCTCGGT GGTGGTGGTG 
    TTGTTGGTGG TGCAGTTCTT GGAGTCACAT GGTTGGTGGT GGTGTGGGCA 
    GTTCTTGATC CAGGCTCAGA TTGAAACTGG CGGTCGAGAG ATTCCTGGTT 
    GCAGGAGAAG TTCTTGGTCG CATTTCGGGT GGTGGTGGTG GGTGGTGGTG 
    GCAGTTCTTG ATCTGCTCCC TCGGGAGAAT TCGATTGATG TGGTGGGTTC 
    TCTCTCTTCT TCTTCTCCTT GGAGCTCAGT TCCCCAATTC GCCATTTTGA 
    TGAGGAGCTC CCACTGTGAG AGCTACTGCG CTCCTCCCTT GTGCAACCTC 
    CCCTGCCTCC CCAAATCCAA AGACGATTCG ACCACGGACG ATGCCGCCGC 
    CGCGTCGTCT CCAACTCCGG CCACCGTCGT CGCCGCAGCT TTCGCTGAGG 
    ACAAGCCTCC TCCGCTGCAG AAGATTGAGG CGGCGGTGAC GGCAAACAAG 
    GATCATGATG ATGATGGTGA TGGTGGTGGT GATGAGGGTA GCAAGGAAGT 
    GGTGGTGACA GTGGTTCCCA AGAGTAGCCT GAAGAAGACT AATTGTGAGG 
    ACAGTAAGAA TGTGGTGAAG GGCAATGTGA AATGGATGGA TTTGCTGGGG 
    AAGGATCTCA CTCAAGTTAA AGAATTTGAG CCAAGCGAAT CTGGAGACTC 
    GGATGACGAA GACGGCAACA CCTGCATCTG TGTCATCCAG TAAGCAGCCC 
    CTTGGAGATC ATCCCTGTAA ATTCTCTGAA AGGAAAAACC GAAAAACAAG 
    TGTCTGGGTC AGCCATTAGT TGTTTATTTG TCAGTAGAGA GATCAGAGAG 
    CCCCCCATTG TGTCGTTGGT TTATCTGGAA TTGTGGATGG AATTGGGTTG 
    TGTTGTACTA TCAATCAGCA GCAGCTTCAC CAGTACATGT TGCACATGCA 
    TAGAGTTTAG ATTTTAGAAG ATTCCTGCAA AGATCTG

    Gene models with high sequence identity

    1. AT1G55475.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 5e-06; Score: 49.30

     

    InterPro Scan Digest

    See the detailed result >

    AT1G55475.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR