K45950

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K45950

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
  • abnormal (PATO:0000460)
    (Root::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Original: K45950

Determination of introduced cDNA(s)

  • J013101M12 - Rice Full-length cDNAs - Original: J013101M12

    full reading [+] show sequence

    Nucleotide sequence: J013101M12 - full reading
    GTTTGGATTC CTCCTCCTCC TGCTGCTGCT CTCTCTCCTC CAAGGCTCCA 
    ACACATCCTG GTCCAGAGAG AAAAAGGGGA GATATTTTTT TGGGGGCGCA
    TGATTCGATC CCTTGTTGTT TGCTGTTGTT GCCTTGCTGC GCAAAGATTT
    GGTCCTTTCT CGGTCTGTTT CTTGGCCTGT TCAGCTCGGT GGTGGTGGTG
    TTGTTGGTGG TGCAGTTCTT GGAGTCACAT GGTTGGTGGT GGTGTGGGCA
    GTTCTTGATC CAGGCTCAGA TTGAAACTGG CGGTCGAGAG ATTCCTGGTT
    GCAGGAGAAG TTCTTGGTCG CATTTCGGGT GGTGGTGGTG GGTGGTGGTG
    GCAGTTCTTG ATCTGCTCCC TCGGGAGAAT TCGATTGATG TGGTGGGTTC
    TCTCTCTTCT TCTTCTCCTT GGAGCTCAGT TCCCCAATTC GCCATTTTGA
    TGAGGAGCTC CCACTGTGAG AGCTACTGCG CTCCTCCCTT GTGCAACCTC
    CCCTGCCTCC CCAAATCCAA AGACGATTCG ACCACGGACG ATGCCGCCGC
    CGCGTCGTCT CCAACTCCGG CCACCGTCGT CGCCGCAGCT TTCGCTGAGG
    ACAAGCCTCC TCCGCTGCAG AAGATTGAGG CGGCGGTGAC GGCAAACAAG
    GATCATGATG ATGATGGTGA TGGTGGTGGT GATGAGGGTA GCAAGGAAGT
    GGTGGTGACA GTGGTTCCCA AGAGTAGCCT GAAGAAGACT AATTGTGAGG
    ACAGTAAGAA TGTGGTGAAG GGCAATGTGA AATGGATGGA TTTGCTGGGG
    AAGGATCTCA CTCAAGTTAA AGAATTTGAG CCAAGCGAAT CTGGAGACTC
    GGATGACGAA GACGGCAACA CCTGCATCTG TGTCATCCAG TAAGCAGCCC
    CTTGGAGATC ATCCCTGTAA ATTCTCTGAA AGGAAAAACC GAAAAACAAG
    TGTCTGGGTC AGCCATTAGT TGTTTATTTG TCAGTAGAGA GATCAGAGAG
    CCCCCCATTG TGTCGTTGGT TTATCTGGAA TTGTGGATGG AATTGGGTTG
    TGTTGTACTA TCAATCAGCA GCAGCTTCAC CAGTACATGT TGCACATGCA
    TAGAGTTTAG ATTTTAGAAG ATTCCTGCAA AGATCTG

    Gene models with high sequence identity

    1. AT1G55475.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 5e-06; Score: 49.30

     

    InterPro Scan Digest

    See the detailed result >

    AT1G55475.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR