K46018

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K46018

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K46018

Determination of introduced cDNA(s)

  • J013108N17 - Rice Full-length cDNAs - Original: J013108N17

    full reading [+] show sequence

    Nucleotide sequence: J013108N17 - full reading 
    GTGTTCCTAC CCCCACCAGC AAGCAGCAGC TGAGGTGAGG TCCGTGGCGT 
    TGGAGTGAGG ACTGAGGAGG AAGAAGAGGG CGGGATCTAG GGTACCGGAT 
    GCGCTGGCTG TGCTGAGTGA GAGTAGAGAT GAGCGCGTCT CGGTTCATCA 
    AGTGCGTCAC CGTGGGGGAC GGCGCCGTGG GCAAGACCTG CATGCTCATC 
    TCCTACACCT CCAACACCTT CCCCACGGAC TATGTTCCAA CTGTTTTTGA 
    TAACTTCAGT GCAAATGTTG TGGTCGATGG GAGCACTGTG AACTTGGGGT 
    TGTGGGATAC AGCAGGACAA GAGGACTACA ATAGGCTACG CCCGTTGAGC 
    TATCGTGGCG CTGATGTTTT CCTGCTGGCC TTTTCTCTGA TCAGCAAAGC 
    AAGCTATGAG AATGTTTCTA AAAAGTGGAT ACCTGAATTA AGGCATTATG 
    CTCCTGGTGT GCCAATAATT CTCGTTGGAA CAAAGCTTGA TCTGCGGGAT 
    GATAAGCAAT TTTTCGTAGA TCACCCTGGT GCTGTACCTA TTTCCACTGC 
    TCAGGGCGAA GAGCTGAGGA AACTCATTGG TGCAGCGGCA TACATTGAAT 
    GCAGTTCAAA AACACAGCAA AACATCAAGG CAGTTTTCGA TGCTGCGATT 
    AAGGTGGTTC TCCAGCCTCC AAAGCAAAAG AAGAAGAAGA AAAAGGCGCA 
    GAAAGGATGT GCCATCTTGT AATTAAATGG TAGACAGTGC AGTGCAGATC 
    GATGTATCCC TTCATTTGTA GCCTCTGGCT TCAATCGTCG CTTGTTTGTA 
    TAATTACGCT AGATGCCACC GGCAGAAGAT ATAATATAGT CCTCCTGCCT 
    TTGTGGTGTT GGTCTCTAAG GTCGTCCAGA CTCCAGAGTC CAGACGCATT 
    TGGTTTCTTT TGTTCTATCT ATAATCAATC TATCTATATC TGCTAGTGTT 
    GTGCTCC

    Gene models with high sequence identity

    1. AT4G35020.3 [+] show detail - RAC-like 3
      E-value: 2e-95; Score: 345.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Ras GTPase 1.8e-37
    FPrintScan Ras GTPase 1.8e-37
    FPrintScan Ras GTPase 1.8e-37
    FPrintScan Ras GTPase 1.8e-37
    FPrintScan Ras GTPase 1.8e-37
    HMMSmart Ras small GTPase, Ras type 7.7e-22
    HMMSmart Ras small GTPase, Rab type 1e-26
    HMMSmart Small GTPase, Rho type 4.3e-116
    HMMTigr Small GTP-binding protein 4e-34
    Gene3D no description 8.7e-57
    ProfileScan Small GTPase, Rho type 25.306
    HMMPanther RAS-RELATED PROTEIN RAC 2.3e-149
    HMMPanther RAS-RELATED GTPASE 2.3e-149
    superfamily P-loop containing nucleoside triphosphate hyd 4.2e-55
    HMMPfam Ras 1.4e-51

    See the detailed result >

    AT4G35020.3

    Model type
    Protein coding
    Short Description
    RAC-like 3
    Curator Summary
    A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein.
    Computational Description
    RAC-like 3 (RAC3); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RAC-like GTP binding protein 5 (TAIR:AT1G75840.1).
    Link
    InterPro Scan - TAIR