K46019

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K46019

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K46019

Determination of introduced cDNA(s)

  • J023082N23 - Rice Full-length cDNAs - Original: J023082N23

    full reading [+] show sequence

    Nucleotide sequence: J023082N23 - full reading
    GGGGTCCAAA AGAGCTCCAC CGCAATGCAA CCAATCCCTT GTCTCTCCGT 
    CGAGGATCAG TAATGCTTCA CGACGATTGC ATCGGTGAGG GACTCTCAAG
    CCCCATAGCT GCTCAAATTC TTGATTTCTG CGATGACGGC CTAGGTGATG
    ATCTCTTCGC TGCAGTGGCC ACTACCTCCG AGCAATTTGC AGCCTCTTCC
    GAGGATGGTT CATCGTCGTC CACAGCCACA CCTCCCCTCT GCAGCAACAG
    CAATGACATC ACAGCTGTTG CAGACACAGC TTTCTCCCCA TTACTCTCCT
    TCGACTCCAC CCTCTCAGCC TTCCTTGAGC AAGAGCAAAA CCCTGACCAG
    GACACCAAGC TACTTCCCTC CATTGATGAA ACCTTTACTG CACCAGCATA
    CTATCCAGCT GCCACCGAGG CCAACATAGA ACAATTCAGC CAAATAATGG
    TTCCAGAGCA TACAGATGCA CCAATGCCCC CAATGCAAAC AAACAGGACT
    GCCAATGCCT TGCTGCCTCT AGCTTCAGGG TATGACGACG AGTGTTTCAC
    AGCAGCACTA GCTGGAGGGT ACATGGGTCT GGATGGAACT CTGTATGACC
    AAACAGGAGT AATGATTCCA AATTGCAATG TGGAGACACC ACAAGTAGGA
    TTTTTCAACC ATAATAGTAC TAGTAACAAT GGTATGGTGA TGGATTTGAA
    TAATTTTGGA GAGTACCAGA GGATGATGGA AGGTGAAGGA CTGACCAGAA
    CATATAGCGA CACAGATTCG ATGCATGGGG CGTTTAATAA CGCTGCAGAG
    ATGCAGATGG GAGAAAACAC CCAGCACATG GTAACTGGAT GCAATGATAG
    CCCACTAACG TTGCCTTCAA CAGAAGGCTC AAGCTTGGAA GATACCCCCT
    ACAAAGGTGT GCGTCTAACA GCTGAACAGA GAAAGGAAAA GATCTCCAGG
    TACATAAAGA AAAGGAACGA AAGGAACTTC AGCAAAAAAA TAAAGTACGC
    TTGTAGAAAA ACCTTGGCGG ATAGCAGGCC TCGGGTCCGC GGAAGGTTTG
    CCAAGAACGA CGAACTCTGT GAAGCTACCA GATCAAGCTC CCAAGATTTT
    GAACAATATG AACATGTTGT GGGAATGAAG GGAGAAGACA TGCTTGATTC
    TTCCAATATT TTGGCACATT TGAGTGGAAT GAACCCTTAC GGCTATAAGT
    ACAACAGCAC TGTGGAATCC TGGATATAAT TCTCATAAAC ACACAAATTA
    AAGTGTGTTT TCCTTTCAAT TGTGCAAGCA TTAAACACAG TTTTCCCTTG
    CTCCCAGTAA ATAAGACTGA TGCTTTAGAA GCTCTATTCG CAAGAGAAGT
    GCTTAGGTCA AGTTATTGTT TCTGCACACT ACTGATTTGT AAATAGAATT
    GTTTCCTTGT CATAATAGAG ATAACAAGTT TC

    Gene models with high sequence identity

    1. AT1G04500.1 [+] show detail - CCT motif family protein
      E-value: 7e-32; Score: 135.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam CCT domain 4.3e-19
    ProfileScan CCT domain 15.507

    See the detailed result >

    AT1G04500.1

    Model type
    Protein coding
    Short Description
    CCT motif family protein
    Computational Description
    CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G33350.2); Has 1789 Blast hits to 1789 proteins in 111 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 2; Plants - 1654; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR