K46525

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K46525

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K46525

Determination of introduced cDNA(s)

  • J013134A03 - Rice Full-length cDNAs - Original: J013134A03

    full reading [+] show sequence

    Nucleotide sequence: J013134A03 - full reading
    GAGGGCTTTG CTCTGGTCTT GCAAGTTAGG TTAGTGATTA GTAGCAGCAG 
    AAAGAGTGGA AGATTTAGAG GATAAGGGAT AGTTTGGTCA TGTCGGATAC
    AGCCTTGTCG GGCGCGCCGC CGGCGGCGAG GTCGGAGGAT TCGTGGAGTC
    AGCAGCAGAG CTACAACTTC AGCGGGCGCG TGCTGCTCAC GGCCGTCGTG
    ATCCTGTTCG TGATCGCCGT CGTCTTCGCC GTCACCCGCG TCTTGCTGTA
    CTACCTCGTG GTGCGGCCCG GCGGTGGCGG CGGAGGCCGT CGTCGTGGCG
    GCCTGGCAGG GGGGATCTTG CGGTCGTTGA ACTCGCTCGG CGTGAGCGGT
    CGCCGCGGGC TGGACGCGTC CGCGCTCGCC GCGCTGCCGG TCACCGCGTA
    CCGGAAGAAC GGCGGCGGGG GCGGTGGTGG GGAGGGCTCC AACCGCGGCG
    GGCCTGGCGC CACCGCCGCC GACTGCGCCG TGTGTCTGTC GGAGCTCGCC
    GACGGCGAGA AGGTGCGGGA GCTGCCCAAC TGCCGGCACG TCTTCCACGT
    GGAGTGCGTC GACGCGTGGC TGCGCTCCAG GACCACGTGC CCGCTCTGCC
    GGGCCGAGGC GGAAGTACCC AAGGCGAGGG CTTCGGCGGC GGCGACGGCG
    ACGGCGCAGT CGTCGTCGTC GCTCGGTGAC GGAGGAATTA CCGTGGTCGT
    GACCATACAC GGCGGCTCTG ACGAAGCCGG TGGCAGGTCA ACGGCGTTGA
    CTGGTCAACC GGGATCCTCG AACTCTCCTA GCTGCGAGGC TGCAAGGAAT
    TGAGGATCGA CGATGACGAC GAACTTCAGA GTTGTGATGT GATTCTTTAT
    TTTGCTATAG GAGCTCTATC AAGTGTAGAT TGTGAAACGC ATTTGTGATG
    TGATTCTTTA TTTCTTTCCC ATATATAGCT AAGAAACAAC TGCATAATAC
    ATTCCCCGC

    Gene models with high sequence identity

    1. AT2G42360.1 [+] show detail - RING/U-box superfamily protein
      E-value: 3e-16; Score: 82.80

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 1.3e-07
    ProfileScan Zinc finger, RING-type 12.725
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 1.9e-16
    HMMSmart Zinc finger, RING-CH-type 0.0077
    HMMSmart Zinc finger, RING-type 5.3e-07
    Gene3D no description 8.4e-15
    superfamily RING/U-box 2.2e-16

    See the detailed result >

    AT2G42360.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42350.1); Has 8862 Blast hits to 8837 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 2202; Fungi - 673; Plants - 4781; Viruses - 60; Other Eukaryotes - 1146 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR