R01638

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R01638

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: R01638

Determination of introduced cDNA(s)

  • J023104K01 - Rice Full-length cDNAs - Original: J023104K01

    full reading [+] show sequence

    Nucleotide sequence: J023104K01 - full reading
    GGTCGGAGTC GAAATCCCCC CCCAAATAGT TGGTGGTAGC GATCAGTAGG 
    CAGGAGAGGA TTAGGAGGGA TCGGAGACCG ACATGGCGGA GGAAGGGCAG
    CGCGGCGGCT ACAGCCGGCT CGCCGGCGAT GAGGAGGTGG CTACGGCGAG
    CGGCGGCGGC GGCGGCGACT ACGACGAGCG GAAGCTGAGG CTGCTCGGCT
    ACGAGCCGCA GCTCAAGCGC AACCTCTCGC TGCTGTCCAA CTTCGCGGTG
    TCGTTCTCGA TCGTGTCGGT GCTGACGGGG ATCACGACGC TGTTCGGGAC
    GGGGCTGCAG TTCGGCGGGC CGGCGACGAT GGTGTACGGC TGGCCCATCG
    CCGGCGCCAT GACGCTCGTC GTCGGCCTCG CCATGGCCGA GATCTGCTCC
    GCCTACCCGA CCTCCGGTGG CCTCTACTTC TGGAGCGCGA GGCTCTGCAG
    CCACCGCCGC TGGGGCCCCT TCGCTTCATG GCTCACCGGC TGGTTTAACA
    TTGTCGGACA GTGGGCGGTG ACGACCAGCG TGGACTTCTC ACTGGCCCAG
    CTGATTCAGG TGATCATCCT GCTCAGCACT GGGGGCAACA ACGGAGGAGG
    GTACATGGCG TCCAAGTACG TCGTGATCGC CTTCCACGCC GCCATCCTGC
    TGAGCCACGC CGCCATCAAC AGCCTCCCCA TCACCTGGCT TTCCTTCTTT
    GGGCAGTTCG CGGCTGCCTG GAACATGCTA GGTGTCTTTG TCCTCATGAT
    TGCTGTGCCG ACGGTTGCTA CCGAGAGGGC CAGTGCCAAG TTTGTGTTCA
    CCCATTTCAA CACTGAAAAC AACGCTGGGA TTCACAGTAA CTTTTACATC
    TTCGTGCTGG GGCTCCTGAT GAGCCAGTAC ACGCTGACAG GATATGACGC
    GTCTGCGCAT ATGACCGAGG AGACGAAGAA TGCTGACAGG AATGGCCCGA
    TCGGCATCAT CAGCGCGATT GGGATATCGA TAATAGTAGG ATGGGGATAC
    ATTCTTGGCA TCACCTTTGC AGTGAAGGAC ATACCTTACC TGCTGAACCC
    CGAGAACGAT GCTGGAGGGT ATGCCATTGC TGAGGTGTTC TACCTCGCCT
    TCAAGAGCCG GTACGGGAGC GGCATCGGCG GATCATCTGC CTAGGGATCG
    TCGCCGTCGC GATATACTTC TGTGGCATGA GCTCGGTAAC AAGCAACTCA
    AGGATGGCGT ACGCGTTCTC GAGAGACGGC GCGATGCCAT TGTCGTCCGT
    CTGGCACAAG GTCAACAAGC ACGAGGTGCC GATCAACGCC GTCTGGCTCT
    CGGCCCTCAT CTCCCTCTGC ATGGCATTGC CGTCGCTGGG GAGCTTGGTG
    GCGTTCCAGG CGATGGTGTC GATCGCGACG ATCGGGCTGT ACGTGGCGTA
    CGCGCTGCCG ATCCTGTTCA GGGTGACGCT GGCGCGGAAG CACTTCGTGC
    CGGGGCCCTT CAACCTGGGG CGGTGCGGCG TCGCCGTCGG CTGGGCGGCG
    GTGCTGTGGG TGGCCACCAT CACCGTGCTC TTCTCGCTGC CGGTGTCGTA
    CCCGGTCACC AAGGACACCC TCAACTACAC CCCCGTCGCC GTCGGCGGCC
    TCTTCCTCCT CGTCCTCTCC TCCTGGCTCC TCAGCGCCAG GCACTGGTTC
    AAAGGCCCCA TCACCAACCT CGATGGCTAG CTAAGCCAAG ATTGAGGCTT
    TGGTTTTGGT TTTCGCCGGT GGATATGGAA ATGCAGTGGG AGATGGAAGA
    ATCGTCGTCG ATGATCGGAG GCGTTTCAGG TGGGAGGAGA AGTATAACTG
    AAGAACAGGT AAGAAGATGA TCTGGAAGGG AAACGGGAGC ATATCATGTC
    ATGGTGGTGG TGTTGTGATT AGTTGTTGAT TTGTTCAGCG AAATTATATT
    ACGTGGAAGG GGATTATACA TTTTATACAC TGGTTGTAGA TTGACAATAT
    GTACTAAGAA ATTGACGATT CAATTGAAGG CTAAAAGCAG CTGAAACAGT
    TGTGG

    Gene models with high sequence identity

    1. AT2G01170.1 [+] show detail - bidirectional amino acid transporter 1
      E-value: 7e-178; Score: 256.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    PatternScan Amino acid permease, conserved site 0
    HMMPanther AMINO ACID PERMEASE-RELATED 1.7e-77
    HMMPanther Amino acid/polyamine transporter I 1.7e-77
    HMMPanther AMINO ACID PERMEASE-RELATED 4.2e-110
    HMMPanther Amino acid/polyamine transporter I 4.2e-110
    HMMPfam Amino acid permease domain 0.0000000000067
    HMMPfam Amino acid permease domain 0.0000000000005

    See the detailed result >

    AT2G01170.1

    Model type
    Protein coding
    Short Description
    bidirectional amino acid transporter 1
    Curator Summary
    Encodes a bidirectional amino acid transporter that can transport ala, arg, glu and lys but not GABA or pro with both export and import activity. Its expression is localized in the vascular tissues suggesting a function in amino acids export from the phloem into sink tissue.
    Computational Description
    bidirectional amino acid transporter 1 (BAT1); FUNCTIONS IN: arginine transmembrane transporter activity, L-lysine transmembrane transporter activity, L-alanine transmembrane transporter activity, L-glutamate transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid permease subfamily (InterPro:IPR004756), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); Has 15465 Blast hits to 15422 proteins in 1894 species: Archae - 296; Bacteria - 11987; Metazoa - 438; Fungi - 2169; Plants - 254; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR