R02819

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R02819

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R02819

Determination of introduced cDNA(s)

  • J013000P02 - Rice Full-length cDNAs - Original: J013000P02

    full reading [+] show sequence

    Nucleotide sequence: J013000P02 - full reading 
    CCCTCTCGAG CAAGCACCCA AACCCTCCCC TCTACCCCGC CGCCGCCGCC 
    GAGGAAGGGG CAAGAGGAAG CCGGCGAAGA TGAAGACCAT CCTGGCGCCC 
    GAGACGATGG AGATCCCGGA GGGGGTGACG GTGCAGGTCG CCGCGAAGGT 
    GGTGACGGTG GAGGGCCCCC GCGGGAAGCT GACCCGCAAC TTCAAGCACC 
    TCAACCTCGA CTTCCAGCTG CTGGAGGGCG GCCGCAAGCT GCAGGTGGAC 
    GCGTGGTTCG GCACCCGCCG CACCATGGCC GCCATCCGCA CCGCCATCTC 
    CCACGTCCAG AACCTCATCA CCGGCGTCAC CAAGGGCTAC CGCTACAAGA 
    TGCGCTTCGT CTACGCTCAC TTCCCCATCA ACGCCTCCAT CACCAACTCC 
    AACACCGCCA TCGAGATCAG GAACTTCTTG GGCGAGAAGA AGGTGAGGAA 
    GGTTGACATG CTCGAGGGGG TGACCATCTT GCGGTCGGAG AAGGTGAAGG 
    ACGAGCTCGT CCTCGACGGC AACGACATCG AGCTCGTCTC TCGCTCAGCA 
    GCCCTCATCA ACCAGAAATG CCACGTGAAG AACAAGGATA TCAGGAAGTT 
    CTTGGATGGT ATCTACGTGA GCGACAAGGG TACCATCACA GAGGATGCGT 
    AAACTCCTAT CTTCACCTAG TATCATGAAG TGCTGTTTCT TGTCTCCCGT 
    GTCTGATCAT CCTCTGAGTT GCAATTTTCT GAGAGACTGA ATTTTGTAAT 
    GGTGGGTTAT TTAGGATGTA ATGGAGCATG GTATCTTATC CTACATATTG 
    TTTCTGTTTG CGATTATGAA GTCTATTTAT CATCCCCTAA AGACAGTTTA 
    CTGGAAGCAT TCGTGGTTAG ATAAACAGCA TAATGC

    Gene models with high sequence identity

    1. AT1G33140.1 [+] show detail - Ribosomal protein L6 family
      E-value: 9e-74; Score: 273.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L6, conserved site-2 0
    Gene3D Ribosomal protein L6, alpha-beta domain 2.7e-18
    Gene3D Ribosomal protein L6, alpha-beta domain 4.9e-36
    superfamily Ribosomal protein L6, alpha-beta domain 2.2e-29
    superfamily Ribosomal protein L6, alpha-beta domain 8.2e-19
    HMMPanther 60S RIBOSOMAL PROTEIN L9 6.6e-126
    HMMPanther Ribosomal protein L6 6.6e-126
    HMMPfam Ribosomal protein L6, alpha-beta domain 2.2e-14
    HMMPfam Ribosomal protein L6, alpha-beta domain 3.4e-14
    Coil coiled-coil 0

    See the detailed result >

    AT1G33140.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L6 family
    Curator Summary
    Encodes ribosomal protein L9. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.
    Computational Description
    PIGGYBACK2 (PGY2); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: adaxial/abaxial pattern formation, translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G33120.1); Has 1644 Blast hits to 1643 proteins in 495 species: Archae - 312; Bacteria - 169; Metazoa - 422; Fungi - 179; Plants - 339; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR