R08434

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R08434

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R08434

Determination of introduced cDNA(s)

  • J033027E22 - Rice Full-length cDNAs - Original: J033027E22

    full reading [+] show sequence

    Nucleotide sequence: J033027E22 - full reading 
    GACGAAGACA AAGTCAGAGG TCACACAGCT CATCGTCTCG AGCTACCTAG 
    CTGGAAGAAG AAGAGGAAGA AGAGGAGGAG GAGCTCGTCG GAGTTTAGTT 
    GGTGAGTTCG CCGGAGAGAT CGATCATGGA GAATCTGAAG GCGACGGAGC 
    TGAGGCTCGG GCTGCCGGGG ACGGAGGAGG AGGCGGCGCC GCCGCCGTCG 
    ACGCCCAGGG CCGGAAGCAA GCGCGCCCTC GCCGGCGAGC CTGATCAGGC 
    CAAGATCAAG CCCGCCGCCG CCGCCAAGGC GCAGGTGGTG GGATGGCCGC 
    CGGTGAGGTC GTACAGGAAG AGCTGCCTCC AGCCGACGAC GACGACGACG 
    AAGAGCAAGC CGCCGCCGGC TGCCGCGGCG GCGGAGACGC AGCAGAAGGA 
    GGATGTCGCC GGCGCCGGTG GGCTGTTCGT GAAGGTGAGC ATGGACGGAG 
    CTCCATACCT GAGGAAGATA GACCTCAAGG TGTACAAGGG CTACCGGGAG 
    CTTCGCGAGG CACTGGAGGC CATGTTCCTC TGCTTCTCCG GCGGCGCCGC 
    CGCCGACGCC GCCGTCAACC CGTCCGACTT CGCCGTCACC TACGAGGACA 
    AGGACGGCGA CCTCATGCTC GTCGGCGACG TCCCATTCGA GATGTTCATT 
    AGTACGTGCA AGAGGTTGAG GATCATGAAG GGGTCTGAAG CAAGAGGCCT 
    AGGAGCAACA AGGGGTTAAA AACTGAACAA CAACAAGAAG AAATCATCAT 
    CATGTGTGCA TGAGCAATTC TTTTGTTCTT TTTGGGTTCT CCAAGACATG 
    CAATCATCTC ATCTCCTCAT TGCAACCTTC AAGAAAGAGA GAGAGAGAAA 
    GAAAAGGAAA GCAAAAAAAA AAAAGATGCA GTGAAAAAAA TATGTGAAGC 
    TTAATTGGAG TCATCAGATT GCAAAGCATG CATGCATGTG TGGATGTGTG 
    GCTTTAATTT GTTTTTTTCC TCTTAATTAG GTGTTAGAAA ACACAGAAGG 
    AATGGAGGTT CGAGTTGAGC CTCCATGTGT GTTTGTACAA AGCAAACATC 
    TTTTTTCTTT TACATGAATG GTTGATTACT TTTGTAACTG GAGGGAAGAA 
    GAATGCATGT ATGCATGGGC TGTGTGTACT TCTCCCTCTG GCTTCAATGC 
    TTTGATTTCC ATCCG

    Gene models with high sequence identity

    1. AT1G04240.1 [+] show detail - AUX/IAA transcriptional regulator family protein
      E-value: 7e-40; Score: 161.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Aux/IAA-ARF-dimerisation 28.169
    Coil coiled-coil 0
    HMMPfam AUX_IAA 2.9e-57
    superfamily CAD & PB1 domains 0.00000000004

    See the detailed result >

    AT1G04240.1

    Model type
    Protein coding
    Short Description
    AUX/IAA transcriptional regulator family protein
    Curator Summary
    SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro.
    Computational Description
    SHORT HYPOCOTYL 2 (SHY2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to cyclopentenone, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: AUX/IAA transcriptional regulator family protein (TAIR:AT5G43700.1); Has 1823 Blast hits to 1821 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1822; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR