R90252

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90252

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • coiled (PATO:0000404)
    (Cauline leaf::Shape::spiral)
rosette leaf (PO:0000014)
  • decreased length (PATO:0000574)
    (Rosette leaf::Shape::short)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90252

Determination of introduced cDNA(s)

  • J013118A14 - Rice Full-length cDNAs - Original: J013118A14

    full reading [+] show sequence

    Nucleotide sequence: J013118A14 - full reading 
    GAGGCTGGTC CCGTTTCTCA CTTCGCAACA CTAGGCTTTT TGCCCGAAGC 
    GACTCGACTC TACACCCCTC ACCCTACCCT ACCCTAGCAA CGAGGCGGCC 
    ATGGCGGACG AGGAGCACGA GGTGTACGGA CAGGAGATCC CCCTCGACGG 
    GGAGGACGTC GACATGGGCG CCCCCGGCGA CGAGGCCGCC AAGATGCAGG 
    AGCTCGACGA GATGAAGCGG AGGCTCAAGG AGATGGAGGA GGAGGCCAAC 
    GCGCTCCGCG AGATGCAGAC CAAGGTCGCC AAGGAGATGC AAGGTCTGGA 
    TCCTAATGCG TCCTCATCTG AATCAAAAGA GGAAATGGAC GCTCGGTCGG 
    TATATGTTGG AAACGTTGAC TATGCATGCA CCCCAGAGGA AGTCCAGCAG 
    CATTTTAATT CCTGTGGAAC GGTCAACAGG GTGACAATCC TGACAGACAA 
    GTTTGGGCAA CCAAAAGGTT TCGCTTATGT TGAATTCCTT GAAGTAGAAG 
    CTGTTCAGGA AGCTGTTAAG TTGAACGAAT CAGAACTGCA TGGTCGCCAA 
    ATCAAGGTGG CGCCAAAGAG GACTAACGTC CCTGGGATGA AGCAGCCCCG 
    CGGAGGCAGA GGATTCGGTG GTCATCCTTA TATGAGGCCA TATGGAGCAC 
    CATTTTACAA TCCCTATGGT TATGGATACC CCAGATTCCG CCGTCCACGC 
    AGGCCATACT TTTGAAGCTG TCTTCGTGGA GTCTTCAGCA CATGACATTA 
    GTCCAATAGC CCAAAGAATC CGTCGTTGTT GCTGTATTTC GATACTTCAT 
    AGTTAGCAAC TATAAAGTTC GATCACTTTC TTCACAGGGT GTTTTTTGTT 
    GTTTAAAGAT ATGTGCAAAT TCAGGCAGCA GCATTATGTA CTATTAACTT 
    CGTTTATGTG GAAGTGCGCA CTATTTTGGG TTTTGGCT

    Gene models with high sequence identity

    1. AT5G65260.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 5e-57; Score: 218.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RNA recognition motif, RNP-1 7.7e-18
    ProfileScan RNA recognition motif, RNP-1 17.182
    Gene3D Nucleotide-binding, alpha-beta plait 1.6e-24
    superfamily RNA-binding domain, RBD 1.2e-25
    HMMPanther POLYADENYLATE-BINDING PROTEIN 2 5e-28
    HMMPanther RNA-BINDING PROTEIN 5e-28
    Coil coiled-coil 0
    HMMSmart RNA recognition motif, RNP-1 4.5e-22

    See the detailed result >

    AT5G65260.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR