R90261

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90261

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1 cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90261

Determination of introduced cDNA(s)

  • J023022K12 - Rice Full-length cDNAs - Original: J023022K12

    full reading [+] show sequence

    Nucleotide sequence: J023022K12 - full reading
    GGTGGATTTT CTGGTCGGCT CCGGCCGCCG CGGGCGCGTT GGCTTCCGCT 
    TCGGTTTAGC GGATGCGGGC TTCCGCTAGG GTTTCTCCCG CTCTGTTGTT
    AAATGAAGAA AGCACTTGGA ATACACCCAG TAGTTGCACT TTACCTGCTG
    GAGAGATGCA TTGACTGGTC AAATTCTGAA TGATTGCTCT GAGTTGTCTA
    ACTTGAGCAA CAGAACAGGA ATGGCTAAGT GGGGGTGTCA AGACTCAAGA
    AGTTCAGAAA GTAAAATACT TTTCATGCCA CATGCGCCAC AAGACATGGG
    CTGTGGATGC CAGATGATTG GAGAAGAGAC CAGCCAGCAT CGTGACACTG
    CTGAGTCTGA TACACATCAT GAGGCCAAGT AACATGGTTT GCGTGGTTCT
    TTCTGACAGT GTAGGCCTCC AAGTCGCCTT CTCACCAGCA CTTTATCTCC
    TGTTGTTCTG AGCTTCTCCC ACTTGCAAGG GGCAATACAC GAGTAGCAGA
    ACATACACTA CACATCACTC CTCAGTATGG CCTGTCCCTC TCTTCCATCT
    CTAAGAGTTC CTCTTCCCAA TTCATGTTTC TGGCATGTGA CTGCCATTGG
    GGCCATATTG TAGTGTGGCC CCTGTTGGTC AGAGCCTTGA GCTAGGTGAC
    ACACTTGTTG TAAACGGGAA GGTCACTCTC CCTCTTGCCT GATCTCATCA
    GGTTCCTCTA TTTGCAGCTA GTAGTAGTCT ATTTAACACG CCAGTAGCCA
    CCCATTTCTT TCTCCCGTGC GGCTGTCTTG TGTTTCTCAA ACTTTGTCTT
    ACGCCAGCCA ACCGTAAACA GACACTGTCT GCGCGTCTCT CTTGCAAGAA
    CAGCTAGCTC TCCCATACAT CTCTCCTACG TTGGCTGAGA TCGATTGCTG
    CCACCTACAT TGGCCGATAT GTCAAGCCGG AGGTCACGGT CGAGGCAGTC
    AGGCTCGTCG AGGATCACCG ACGAGCAAAT CAGCGATCTT GTATCCAAGT
    TGCAGGATCT CCTCCCCGAG GCTCGACTCC GGAGCAATGA TAGAGTGCCA
    TCTTCGAGGG TTCTGCAGGA GACTTGCAAC TACATCAGGA GCTTGCATCA
    GGAGGTCGAC GACCTGAGCG AGAGGCTGTC GGAGCTGCTG GCCACGTCCG
    ACATGAGCAG CGCGCAGGCG GCGATCATCC GCAGCCTTCT GATGTAGCCG
    CCGGCGGCCG TCGTCGCCAC ATTGTCTTTT GCTGCTGGGC AATCAGCGCG
    CACACACCCT CGGAATGTTT GTAGCTTAGA GAGTGATCTT AATTAGTACT
    GGAGGAGCAG GGATTCCTAA TTCACTCTAC GTTCATAAGT AATGTAATGT
    TGTTGTCATG TCATCTTCTA AACCAGATCA ATCTTTTTTG TGTACTTAAT
    CAAAATCCAT CCTGATTCGT GC

    Gene models with high sequence identity

    1. AT1G26945.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 1e-24; Score: 111.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Helix-loop-helix DNA-binding 0.0000011
    ProfileScan Helix-loop-helix DNA-binding domain 9.119
    Coil coiled-coil 0

    See the detailed result >

    AT1G26945.1

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Curator Summary
    Encodes a basic helix-loop-helix (bHLH) protein involved in blue/far-red light signaling. Physically interacts with HFR1 and negatively regulates its activity.
    Computational Description
    KIDARI (KDR); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: response to light stimulus; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT3G28857.1); Has 97 Blast hits to 97 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR