R90268

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90268

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90268

Determination of introduced cDNA(s)

  • J033112K22 - Rice Full-length cDNAs - Original: J033112K22

    full reading [+] show sequence

    Nucleotide sequence: J033112K22 - full reading 
    GAATCACTCA TCCAAGTATC CAACAAAGAA CAAACCCACC CCCGCCGCTG 
    AGATCGAATC CGACCTTAAT TTTCACCTGC TCGCTGATCT CGCCGGCCGT 
    CGACCGCCAT GGGGATGGTG CTGGGCAAGA TCACGGTGGA GACGCCCAAG 
    CACGAGGTGC TCCACACCGG CGCCGGCTAC GAGGTCCGCA AGTACCCGCC 
    GTGCGTCGTC GCCGAGGTCA CCTACGACCC CGCGGAGATG AAAGGCGACC 
    GCGACGGCGG GTTCACCGTC CTCGGCAACT ACATCGGCGC CCTCGGCAAC 
    CCGCAGAACA CCAAGCCAGA GAAGATCGAC ATGACCGCGC CGGTCATCAC 
    CTCCGGCGAG CCCGAGAGTA TCGCCATGAC GGCCCCGGTC ATCACCTCCG 
    GTGAGCCTGA GCCGGTGGCG ATGACCGCGC CGGTGATCAC GGCCGAAGAG 
    CGCAGCCAGG GGAAGGGTCA GATGACAATG CAGTTTCTGC TGCCGTCCAA 
    GTACAGCAAG GTGGAGGAGG CGCCGCGGCC GACGGACGAG CGGGTGGTGC 
    TGCGGCAGGT GGGGGAGAGG AAGTACGGGG TGGTGAGGTT CAGCGGCCTG 
    ACCGGAGACA AGGTGGTGAA GGAGAAGGCG GAGTGGCTCA AGGCCGCGCT 
    GGAGAAGGAC GGGTTCACCG TCAAGGGCCC CTTCGTGCTG GCGCGGTACA 
    ACCCGCCGTT TACTCTGCCT CCGCTGCGCA CCAACGAGGT CATGGTCCCC 
    GTCGAGTGAT ACGGCGAGAC TCCATTGTTG GTGTCTAGTG ATGTACTGAT 
    GCGCATGTAC TTTTATCAGG GTGTCCTTGT TACTCCTAGG CCCTAGCTAT 
    TTCTCTATTT CTTTATCCTT TTGACTTTGT TCTGTACTGA TGTATGTTTG 
    GATCAACGAA TAATGGACAT ATCTTGGG

    Gene models with high sequence identity

    1. AT2G37970.1 [+] show detail - SOUL heme-binding family protein
      E-value: 8e-76; Score: 280.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther HEME-BINDING PROTEIN-RELATED 5.8e-64
    HMMPanther SOUL haem-binding protein 5.8e-64
    HMMPfam SOUL haem-binding protein 2.4e-19
    HMMPfam SOUL haem-binding protein 7.8e-39

    See the detailed result >

    AT2G37970.1

    Model type
    Protein coding
    Short Description
    SOUL heme-binding family protein
    Computational Description
    SOUL-1; FUNCTIONS IN: binding; INVOLVED IN: N-terminal protein myristoylation, red or far-red light signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT3G10130.1); Has 1375 Blast hits to 1375 proteins in 156 species: Archae - 18; Bacteria - 186; Metazoa - 71; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 927 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR