R90286

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90286

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90286

Determination of introduced cDNA(s)

  • J033040A11 - Rice Full-length cDNAs - Original: J033040A11

    full reading [+] show sequence

    Nucleotide sequence: J033040A11 - full reading 
    GGGCTCTTCA CAGTCCAGGA CTGGAGCTGT GGTCCGGTGG AGGTTATAGA 
    GAAGAAGCAG AGAGCAAGAA TGGCTGGGCT GTATGAGAGA CCGTCGGAGA 
    CGTACACCAA GAAGCGGCCT CGGTACCCTG ACGCTTGGTT CTCCAAGCTC 
    GCCGCCCTCA CAGCCGGCCA CCACCGCGCC TGGGACGCCG GCTGCGGCAC 
    CGGCCAGGCC TCCATCAGCA TCGCGGAGCA CTACGACAGC GTGGTCGCGA 
    CGGACGCGAG CGAGGGGCAG ATCCGCCACG CCGTCGCGCA CCCCAAGGTG 
    CGGTACCTGC ACACCCCGGT GGACCTCTCC GAGGACGACC TCGTCGCCAT 
    GGTCGGCGGC GAGGGCTCGC TGGACCTCGT CGTGGTGGCG ACCTCCATCC 
    ACTGGTTCGA CATCCCGCTC TTCTACGCCG TGGCCAACCG CGTCCTCAAG 
    AGGCCCGGCG GCGTCCTCGC GGTGTGGGGC TACAACTACG AGATCCACCC 
    GTTCGAGGAC AAGCTGCACG GCCAGCTGTA CCCGGCCATG CGCCCGTATA 
    TGGACCCGAG GACGAGGCTG GCCATGGACA GGTACCGCGA CCTGCCGTTC 
    CCGTTCGAGC CCGTCGGCGT GGGCCGCGAG GGCGAGCCGG CCGACGTCGA 
    CATAGAGGTG GACATGACGC TGGACGACCT CGTCGGGTTC CTGAAGACCG 
    GCTCCGTCGT GACGACGGCG AGGGAGAAGG GAGTAGACCT GGAGGCGGTG 
    ACCAAGGACG TGATGAAGGG GGTGGAGGCG GAGTGGGGAG ACCCGGCGGT 
    GGCGAGGAAG CTCGTGTTCA AGGCCTTCAT GCTCGCCGGG AAGCCCAAAG 
    TGCTGAACTG AAACGTACGC TGAACCGCTG ATTGCTGATC ATTGGTCAAC 
    CGCGTCTTGT TTCGTTGCGA TAGATTGGTG ACTTCACCAG AATAAATTCC 
    GGAGAGACGA CTGAGGCCCT GTTTAGATGA AACTATTTTT AAGTCCCTAT 
    CATATCGGAT GTTTGAAAAT TAATTATAAA TATTAAACGT AGACTATT

    Gene models with high sequence identity

    1. AT5G10830.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 2e-69; Score: 259.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther METHYLTRANSFERASE 0.000012
    Gene3D no description 1.8e-18
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.7e-24
    HMMPfam Methyltransferase type 11 0.000000023

    See the detailed result >

    AT5G10830.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G22530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR