R90289

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90289

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
rosette leaf (PO:0000014)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90289

Determination of introduced cDNA(s)

  • J023048O04 - Rice Full-length cDNAs - Original: J023048O04

    full reading [+] show sequence

    Nucleotide sequence: J023048O04 - full reading 
    GGTGATGGTG AGAATCAAGT GAGTTAGGCT GATCTCGCCA CCGATTCCCC 
    TCCGATTAAC CCACCTAGAA GTCGCTTAGA GGCGAGGCGA GGCGACTAGG 
    CTGGCTCTGC CTCCTTCTGC TGGCGGCAGC TCCCAGCAGG TTGCCACCTC 
    CACCGTGCGT CGCTCCTTTC CCGGCGTCTC CTCCCGTGGC GCGGAGCACG 
    AATCAAGCAG TTGAGAGTGG AACAGAGATG GCAGGAGCAT TTGTTAGTGC 
    TTCAGTAGGG GTGCTGAATC CTCTTCTAAC CAAGCTTTCC GCCTTGGTCG 
    AGGGAGAGTA CAAGCTGCTC AAAAGTGTGA AGAAGGATAT CATCTTTTTG 
    AGGAATGAGC TCAGCAGCAT CAGTGTCTTG CTTGAGCATC TGTCGACCAA 
    GGAGGACAAG CTTGATGGGC CGACCAAGGA GTGGAGGAAC AACATGCTCG 
    AGCTAGCTTA TGATATTGAG GATTGCATCG ACCTCTTCAT CCACAAGTTG 
    AGTTGTGGCG ATGCGAATGC CAACTTTGTT CAGAAGATAG GAAGCAAGAT 
    AAAGAAGTTA TGGGGCAAAC ACCAGATCAC AGAGTGTATC CAAGAACTGA 
    AGAATCGGGT TATGGAGGAG GATCAACGTC GCAAGAGGAA TCAGATCGAT 
    GATTTCATCT CCGAGCCAAG TGTGGTGGAA ATTGATCCCC GTCTACCGGC 
    ATTGTATGAG GAGGTGGAGA GGCTCGTGGG GATTGATGGT CCAAGGGAGA 
    AGATCATTAA GTGGATCATG ACCAAAGGCA AGCCATTAGA GCAACGTAAA 
    GTGGTTTCTA TTGTTGGTTT GGGTGGTCTT GGAAAGACAA CTCTAGCTAA 
    TGAAGTGTAC AAGACAATAC AAGGGGATTT TAAGTGTATA ACTTTTGTGT 
    CTATTTCACG TACCCCTAAT ATAAGGAAGA TCTTGGTTGA TATGCTTAAA 
    GGGCTCGGGA GCAATGGAGA TGTATCGGAA GATGAGCAGA ACCTCATCAG 
    TCATCTTCGA GGATTCTTGA AAGATAAAAG GTACCTCATT GTTTTTGATG 
    ACATTTGGGA CATAGGTGCG TGGAAGGTGG TCAATTGTGC TTTCCCAGAG 
    AATAATTTGG GCAGTATAAT CATAACAACA ACAAGAAACA CTGCCGTAGC 
    TGAAGCATGC AGCCGTACCA CATCTGAAGG CTATCTTCAC AGCATGCAGC 
    CACTAGAAGA GCAAGATTCA CAGAGATTAT TTTACCGGAG AGCTTTTAAT 
    TCTGAGAGTT GCTGCCCGCC TCACCTGGAA GACATCTCTC ATGCCATCAT 
    ATCGAAATGT CGTAGTTTAC CATTAGCTAT AATCTCCATA GCTAGCTTGC 
    TATCAATCAA ACCTGATACA GAGGACCAGT GGATGCAAGT GCACAATTCT 
    ATTGGTGTTA CACTAAACTC AGACGTCGAA GTGAGAAAAA TTTTGATGCT 
    CAGTTATTAT GATCTTCCTT ATCCCCTGAA AAATTGTCTG TTGTATCTCA 
    GCATGTATCC AGAGGATTAT GTAATTGATA GACAAGAACT TATATGGAGA 
    TGGATAGCTG AAGGATTCAT CATTGAAGCG AAGGGAAAAA CACGGGAGCA 
    AGTAGGAGAG AACTACTTCA ATGAGCTTAT AAATAGAAGC TTGATCCAAC 
    CAGTTTATAT CCAATATGAT GGTAGGGCCA GTTGCTGCCG AGTCCACGAT 
    ATTGTGCTTG ATCTTATCAT TAGCCTATCA ACTGGACAGA ATTTCGTCAC 
    AATAGTGCAT GAACAACAGC ATTGGAGTTC TTTCAAGAAG ATTCGGAGGA 
    CCTGGTTCCC ATCCAATGGC ACAGATAATA GAATAGTCAA GGAGATTACG 
    AACAACTGCT CACATGTTCG TTCGCTGTTC TTTGACAGTC CTAAACCGGA 
    GCAAATACCA CAATTTAAGA AATGCCATGC TCTGCGGGTA TTGGTTCTGG 
    ATGGGTGCAT GAGCCTGGAG AGCCAGCATA TTAACAGCCT AACATACCTT 
    TTCCAGTTGA AGTATCTGAA GCTCAATGTT GCAAATGTTA CCGAGATGCC 
    CAAGGATATT GGACGGCTGC AGCAACTAGA AACACTAATT ATTCGTGGAG 
    GAGGACATGT CAACGAAATA AACATTCCGT CAAGTGTTTG TAGACTGCAA 
    AAACTAGAGC GCCTAATTGT TGATTACCCA ATGAGATTGC CAGATGAAAT 
    TGGATTTTTG CAAGCTTTGG AGATGCTATC TCTTTTTTAC AACATAGAGT 
    ACAGCATAAA ATGTTTACAA GAGCTCCGTC GGCTGACCAG ACTAAGGTAT 
    CTGCGCATAA GGACGCCTTT TGGAGGTGAT GTAGCAAGGT TCGAGAGGTA 
    CAAGGACGCC TTTTACATGA CTCTCGATGA GTTAGGTAAA AATAGCCTTC 
    AATCATTACA TGTACATGTT ACAACCAAGT TTTCAGATAC ATTGATGGAT 
    TCATGTTGTA GTAGTGCTCC CGGTCTCAGA GAGCTTTCTA CTTCTGGCGT 
    TGGAATATCA AAACTTTCGG AGCAGATGAT TTCCCTTTCT AATCTTGCCT 
    ATCTTGTGAT CTTCTATAAT ACTAGAAGCA ATGATCAGAA AGATATCAAC 
    CTCCTTGGGT GTATACCCAA GCTTCTCTAT CTTAAAGTAA TATTCGCCCA 
    AGGCTGGGAG GATGGACTCA CTGTAGGCTG TGGTGGATTT CCCTGTCTAA 
    AGGAGTTGAT GTTCAGGCAT AGTCGCCTGC ATTGGTTGTT GTTTGAACCT 
    GGCGCTATGC CAAAACTCCA AAGGCTTTCT ATTGAGTTGT TTGCACAAAA 
    AGCAGCATCC AAACTTGGGT TTGAGCAGAG CTTTGTGCAC CTTTCCAGCC 
    TCCAGCATCT AATCGTCGTT CTCGATTGTT CTGATGCCCA CTACAAGGGA 
    CGTGAAAGCT TTGGAAGATG CCATTAGGAA CGTGGCCAGC ATCCAGACTC 
    GCTGTCTTAC TCTCGAAATT CTAAGGCGCT ATGAAGATGA AATGGTAAAG 
    GAAGATGAAG AGGAGCAGCT AAAAGGCAGT ACAGAGGGAG GTGGAACTGA 
    AGAGCATCAT ATTCAGCAGC CACTGATCAT AGTCGGAAAC CAGAAGCGCT 
    GGAAGCCAGT GCTATTCGGG AATTCAGACA AAGTGCAAGC TAGCTAAACA 
    TTTAATATAT GGTCCTGTTG AGTTAGCGCC GTACCCATTT CTGCTCTGCG 
    TTTCTTCATG GTACATGATG TCTGTGTCTG GGGATCGTGT GCGTTTGTAC 
    CATGGGCTCT TACGCATGCT TGTTCATGTG CGAGCGCGTC GGAGTTAGTA 
    GGCGTCATGT GGACATGTGC TTTCTGCCTT GGGATTGCGC GGCTCAGTCG 
    GGAAGCGCAT GATGGAGTCG TAGGGCGCAT GGCGAGGAGA GCGCTCGATC 
    GTGGGATGGC ACGATCGCCG AGCTATTTAA GTTAATAAAT GCATCAGAAA 
    ATGCT

    Gene models with high sequence identity

    1. AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 8e-62; Score: 236.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.00011
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.00011
    HMMPfam NB-ARC 2.3e-66
    superfamily L domain-like 1.7e-33
    superfamily P-loop containing nucleoside triphosphate hyd 0.0000000000000023
    Gene3D no description 0.00000014
    FPrintScan Disease resistance protein 0.0000000000000039
    FPrintScan Disease resistance protein 0.0000000000000039
    FPrintScan Disease resistance protein 0.0000000000000039
    FPrintScan Disease resistance protein 0.0000000000000039

    See the detailed result >

    AT3G07040.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Curator Summary
    Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
    Computational Description
    RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR