R90289

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90289

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
rosette leaf (PO:0000014)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90289

Determination of introduced cDNA(s)

  • J023048O04 - Rice Full-length cDNAs - Original: J023048O04

    full reading [+] show sequence

    Nucleotide sequence: J023048O04 - full reading
    GGTGATGGTG AGAATCAAGT GAGTTAGGCT GATCTCGCCA CCGATTCCCC 
    TCCGATTAAC CCACCTAGAA GTCGCTTAGA GGCGAGGCGA GGCGACTAGG
    CTGGCTCTGC CTCCTTCTGC TGGCGGCAGC TCCCAGCAGG TTGCCACCTC
    CACCGTGCGT CGCTCCTTTC CCGGCGTCTC CTCCCGTGGC GCGGAGCACG
    AATCAAGCAG TTGAGAGTGG AACAGAGATG GCAGGAGCAT TTGTTAGTGC
    TTCAGTAGGG GTGCTGAATC CTCTTCTAAC CAAGCTTTCC GCCTTGGTCG
    AGGGAGAGTA CAAGCTGCTC AAAAGTGTGA AGAAGGATAT CATCTTTTTG
    AGGAATGAGC TCAGCAGCAT CAGTGTCTTG CTTGAGCATC TGTCGACCAA
    GGAGGACAAG CTTGATGGGC CGACCAAGGA GTGGAGGAAC AACATGCTCG
    AGCTAGCTTA TGATATTGAG GATTGCATCG ACCTCTTCAT CCACAAGTTG
    AGTTGTGGCG ATGCGAATGC CAACTTTGTT CAGAAGATAG GAAGCAAGAT
    AAAGAAGTTA TGGGGCAAAC ACCAGATCAC AGAGTGTATC CAAGAACTGA
    AGAATCGGGT TATGGAGGAG GATCAACGTC GCAAGAGGAA TCAGATCGAT
    GATTTCATCT CCGAGCCAAG TGTGGTGGAA ATTGATCCCC GTCTACCGGC
    ATTGTATGAG GAGGTGGAGA GGCTCGTGGG GATTGATGGT CCAAGGGAGA
    AGATCATTAA GTGGATCATG ACCAAAGGCA AGCCATTAGA GCAACGTAAA
    GTGGTTTCTA TTGTTGGTTT GGGTGGTCTT GGAAAGACAA CTCTAGCTAA
    TGAAGTGTAC AAGACAATAC AAGGGGATTT TAAGTGTATA ACTTTTGTGT
    CTATTTCACG TACCCCTAAT ATAAGGAAGA TCTTGGTTGA TATGCTTAAA
    GGGCTCGGGA GCAATGGAGA TGTATCGGAA GATGAGCAGA ACCTCATCAG
    TCATCTTCGA GGATTCTTGA AAGATAAAAG GTACCTCATT GTTTTTGATG
    ACATTTGGGA CATAGGTGCG TGGAAGGTGG TCAATTGTGC TTTCCCAGAG
    AATAATTTGG GCAGTATAAT CATAACAACA ACAAGAAACA CTGCCGTAGC
    TGAAGCATGC AGCCGTACCA CATCTGAAGG CTATCTTCAC AGCATGCAGC
    CACTAGAAGA GCAAGATTCA CAGAGATTAT TTTACCGGAG AGCTTTTAAT
    TCTGAGAGTT GCTGCCCGCC TCACCTGGAA GACATCTCTC ATGCCATCAT
    ATCGAAATGT CGTAGTTTAC CATTAGCTAT AATCTCCATA GCTAGCTTGC
    TATCAATCAA ACCTGATACA GAGGACCAGT GGATGCAAGT GCACAATTCT
    ATTGGTGTTA CACTAAACTC AGACGTCGAA GTGAGAAAAA TTTTGATGCT
    CAGTTATTAT GATCTTCCTT ATCCCCTGAA AAATTGTCTG TTGTATCTCA
    GCATGTATCC AGAGGATTAT GTAATTGATA GACAAGAACT TATATGGAGA
    TGGATAGCTG AAGGATTCAT CATTGAAGCG AAGGGAAAAA CACGGGAGCA
    AGTAGGAGAG AACTACTTCA ATGAGCTTAT AAATAGAAGC TTGATCCAAC
    CAGTTTATAT CCAATATGAT GGTAGGGCCA GTTGCTGCCG AGTCCACGAT
    ATTGTGCTTG ATCTTATCAT TAGCCTATCA ACTGGACAGA ATTTCGTCAC
    AATAGTGCAT GAACAACAGC ATTGGAGTTC TTTCAAGAAG ATTCGGAGGA
    CCTGGTTCCC ATCCAATGGC ACAGATAATA GAATAGTCAA GGAGATTACG
    AACAACTGCT CACATGTTCG TTCGCTGTTC TTTGACAGTC CTAAACCGGA
    GCAAATACCA CAATTTAAGA AATGCCATGC TCTGCGGGTA TTGGTTCTGG
    ATGGGTGCAT GAGCCTGGAG AGCCAGCATA TTAACAGCCT AACATACCTT
    TTCCAGTTGA AGTATCTGAA GCTCAATGTT GCAAATGTTA CCGAGATGCC
    CAAGGATATT GGACGGCTGC AGCAACTAGA AACACTAATT ATTCGTGGAG
    GAGGACATGT CAACGAAATA AACATTCCGT CAAGTGTTTG TAGACTGCAA
    AAACTAGAGC GCCTAATTGT TGATTACCCA ATGAGATTGC CAGATGAAAT
    TGGATTTTTG CAAGCTTTGG AGATGCTATC TCTTTTTTAC AACATAGAGT
    ACAGCATAAA ATGTTTACAA GAGCTCCGTC GGCTGACCAG ACTAAGGTAT
    CTGCGCATAA GGACGCCTTT TGGAGGTGAT GTAGCAAGGT TCGAGAGGTA
    CAAGGACGCC TTTTACATGA CTCTCGATGA GTTAGGTAAA AATAGCCTTC
    AATCATTACA TGTACATGTT ACAACCAAGT TTTCAGATAC ATTGATGGAT
    TCATGTTGTA GTAGTGCTCC CGGTCTCAGA GAGCTTTCTA CTTCTGGCGT
    TGGAATATCA AAACTTTCGG AGCAGATGAT TTCCCTTTCT AATCTTGCCT
    ATCTTGTGAT CTTCTATAAT ACTAGAAGCA ATGATCAGAA AGATATCAAC
    CTCCTTGGGT GTATACCCAA GCTTCTCTAT CTTAAAGTAA TATTCGCCCA
    AGGCTGGGAG GATGGACTCA CTGTAGGCTG TGGTGGATTT CCCTGTCTAA
    AGGAGTTGAT GTTCAGGCAT AGTCGCCTGC ATTGGTTGTT GTTTGAACCT
    GGCGCTATGC CAAAACTCCA AAGGCTTTCT ATTGAGTTGT TTGCACAAAA
    AGCAGCATCC AAACTTGGGT TTGAGCAGAG CTTTGTGCAC CTTTCCAGCC
    TCCAGCATCT AATCGTCGTT CTCGATTGTT CTGATGCCCA CTACAAGGGA
    CGTGAAAGCT TTGGAAGATG CCATTAGGAA CGTGGCCAGC ATCCAGACTC
    GCTGTCTTAC TCTCGAAATT CTAAGGCGCT ATGAAGATGA AATGGTAAAG
    GAAGATGAAG AGGAGCAGCT AAAAGGCAGT ACAGAGGGAG GTGGAACTGA
    AGAGCATCAT ATTCAGCAGC CACTGATCAT AGTCGGAAAC CAGAAGCGCT
    GGAAGCCAGT GCTATTCGGG AATTCAGACA AAGTGCAAGC TAGCTAAACA
    TTTAATATAT GGTCCTGTTG AGTTAGCGCC GTACCCATTT CTGCTCTGCG
    TTTCTTCATG GTACATGATG TCTGTGTCTG GGGATCGTGT GCGTTTGTAC
    CATGGGCTCT TACGCATGCT TGTTCATGTG CGAGCGCGTC GGAGTTAGTA
    GGCGTCATGT GGACATGTGC TTTCTGCCTT GGGATTGCGC GGCTCAGTCG
    GGAAGCGCAT GATGGAGTCG TAGGGCGCAT GGCGAGGAGA GCGCTCGATC
    GTGGGATGGC ACGATCGCCG AGCTATTTAA GTTAATAAAT GCATCAGAAA
    ATGCT

    Gene models with high sequence identity

    1. AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 8e-62; Score: 236.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.00011
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.00011
    HMMPfam NB-ARC 2.3e-66
    superfamily L domain-like 1.7e-33
    superfamily P-loop containing nucleoside triphosphate hyd 2.3e-15
    Gene3D no description 1.4e-07
    FPrintScan Disease resistance protein 3.9e-15
    FPrintScan Disease resistance protein 3.9e-15
    FPrintScan Disease resistance protein 3.9e-15
    FPrintScan Disease resistance protein 3.9e-15

    See the detailed result >

    AT3G07040.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Curator Summary
    Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
    Computational Description
    RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR