R90296

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90296

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90296

Determination of introduced cDNA(s)

  • J013122G04 - Rice Full-length cDNAs - Original: J013122G04

    full reading [+] show sequence

    Nucleotide sequence: J013122G04 - full reading
    ACATTAAGGT TCAAGGTATT ATTGGACCAT GCACATCTTT GGAAAAGAAA 
    GGAGCTCTAT GTGCCGACAC AGTTGTTGGT CAAGGAAATA CAACAGCATG
    GAAAATGTGT GGTCTTGACA GGAATACTTC ATTAACAGTA TTTTTTGATG
    TCTCACCGAG TGAGCGGTCA AGCCAACCAG GACATCAGAA TCCCGATCTG
    TATATACAAT TTGTAACAAG TTACCAACAC CCAGAAGGTC AAATGAGGAT
    TAGAGTTACT ACCATATGCA GAAAATGGGT GGATGGATCT ACCAACACAG
    AGGAATTAGT CGAGGGTTTT GACCAGGAAA CTGCAGCTGT TGTGTTGGCG
    AGATACATCT CGTTGAAAAT GGAAATGGAG GAAGAGTTCG ATGCAACACG
    GTGGCTTGAT AGATCCCTCA TACGGCTTTG TTCAAGATTT GGGGATTATC
    GGAAGGATGA TCCATCTTCA TTTAGCTTGC ATTCAAATTT CTCTTTGTTT
    CCTCAGTTTA TGTTTAATCT ACGGCGTTCA CAATTTGTTC AGGTTTTCAA
    TAACAGTCCA GATGAGACAG CTTATTTCCG GATGTTACTC AACCGTGAGA
    GTATCACTAA CTCAGTTGCC ATGATTCAAC CATCATTAAT TTCATTCTCT
    TTTGATTTGC CTCCATCTCC TGTATTCCTC GATGTGGCAT CAATAGCAGC
    AGATCGTATA CTGCTACTTG ATGCATACTT CAGTGTTGTC ATCTTCCATG
    GTATGACAAT TGCTCAGTGG AGAAACATGG GTTACCAGAA TCAACCTGAG
    CATCAGCAAT TTGCACAATT GTTGCAAGCT CCTCACGAGG AGGCTCAAAT
    AATAATTAAA GGACGATTTC CTGCTCCAAG ACTAGTTGTC TGTGACCAAC
    ATGGCTCACA GGCAAGGTTC TTGTTGGCAA AGCTGAACCC ATCGGCTACA
    TATAACTCAG CACATGATGT TCCTCCAGGT TCTGACATCA TATTCACGGA
    TGATGTTAGT TTCCAGGTCT TCTGTGAGCA TCTTCAAAGG CTGGCCGTTC
    AGTCCTAAGG ACATGTATGC AAAGTTGTAC ACCGTATCTG ATAGCTATAT
    TTACTGAGTT TGGTAGGTCT GAGTTGTGGG AGATTTCTGC TTTCCCTTTT
    TTTGACCTCA TGTGTTCTTA TTACATCGTG TCAGGTTTTC CGACATCAGA
    CAATTTTTTC GGGAAATAAT CTTGAAAGCA TGTATAAGTT GTCCCCATAA
    TATTATTTAT CCATCATATA TACTTCTTTA TATTGACCTC ACTGTCATCT
    TAAGGTGTAT AGACAAGTAA GATTTTTGTG GT

    Gene models with high sequence identity

    1. AT3G23660.1 [+] show detail - Sec23/Sec24 protein transport family protein
      E-value: 1e-150; Score: 529.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SSF81995 3.3e-38
    superfamily SSF82754 3e-56
    HMMPanther PTHR11141 0
    HMMPfam Sec23/Sec24, helical domain 1.1e-27
    superfamily Sec23/Sec24, helical domain 4.6e-48
    HMMPfam Sec23/Sec24 beta-sandwich 1.9e-24
    HMMPfam Gelsolin domain 0.000000000049

    See the detailed result >

    AT3G23660.1

    Model type
    Protein coding
    Short Description
    Sec23/Sec24 protein transport family protein
    Computational Description
    Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G14160.2); Has 1418 Blast hits to 1403 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 517; Fungi - 392; Plants - 312; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J023028O16 - Rice Full-length cDNAs - Original: J023028O16

    full reading [+] show sequence

    Nucleotide sequence: J023028O16 - full reading
    TTGAAGCCGC GGAATTCCGG AAGCGACTCG CTCTCGTCGG CTCGTCGCAC 
    GCGCGAGCCC ACTTTGCCGG CCACCGGGAT GGCGCCGCCG CGGCCCTCGC
    CGGCGGCGAG GCTGCTGAGG GAGTACGGGT GGGACCTGTT GCTCGGATCG
    ATTGCCGCGT TCTACGCCGT CATGGTGCCC TACACCAAGG TGGAAGAGAG
    CTTCAACGTG CAGGCCATGC ATGACATTCT CTACCACAAC TATCATATTG
    AGAAGTATGA TCATTTAGAA TTTCCTGGTG TTGTCCCTCG GTCATTTATA
    GGAGCATTGG TTGTATCTGT TATCTCATCG CCTGCAGTCT TCGTAATGCA
    TTTATGTCAT GTTCAAAAGG TTTATGGTCT TCTAGCAGTT CGGATAGTGT
    TGGGTAGTAT TATCCTGATG ACTTTGAGAC TTCTCCGAGT TCAGGTAAAA
    AGGAAGTTTG GTCATCATGC TGAAGCATTC TATCTGATAC TAACTGCTAC
    CCAGTTTCAC TTATTGTTCT ACTCAACCAG GCCCCTTCCG AATGTCTTAG
    CTTTAGCTTT TGTTAACTTG ACATACTATT TCTGGTTCAA GGGAAACCAT
    CGACGCACAT TACAGGCCCT GATTGTCGCA GCAGTTATTT TTAGGTGTGA
    CATGATTTTG CTTCTTGGTA CAATAGGACT TGCACTTTTG CTGAGCAGGT
    CTATTTCTCT ATTGGAAGCA ATCAAATGTT GTGTAAGCAC TGCCATTATA
    TGCATTGGCT TCACTGTACT GGTTGACTCT ATACTGTGGC GGCGAATCCT
    GTGGCCAGAA TTTGAGGTTT TGTGGTTTAA TTCAGTTCTG AACCGGAGTT
    CAGAGTGGGG TACACATTCC ATCCATTGGT ACTTCACCTC AGCACTTCCA
    CGCTCCATGC TGGTAGCATA TCCTCTTTGC ATGGTCGGTG CTCTTCTTGA
    CAGAAGGATA GTGCCATACA TACTTCCAGT CTTCTCATTT GTTGTGCTTT
    ATTCAAAGCT TCCACATAAG GAGCTTCGCT TCATTATGGC TTCGATTCCC
    ATGCTTAATG TGTCTGCTTC ACTAGCAGCA AGCAGAATAT ATAATAACAG
    AAAGAAAACT GGGTGGAAGT TACTTTATGT TCTCATGATT GGTGGCTTTC
    TTTCCAGTCT AGGATACTCT GGTGTAACTT TCATGGCATC CTACAATAAT
    TATCCTGGTG GATATGCTCT AAAGGCTCTA CATGAAGCAG ATTCTGTAAT
    GAAGGACAAA ATTGTTCACA TTGATGCCTT CACTGCAATG AGTGGAGTTT
    CACGTTTCTG TGAAAGTGAA TATCCTTGGA GATATTCTAA GGAGGAAAAA
    ATTTCCATCG AGGAATATCA GGAAAGAAAT TTCACATATC TGCTGAATGA
    ACACCGCCAT ATCAGTGGCT ACAAGTGCTT GTTTGCCGTG GATGGATTCT
    CCAGAGCGAA AATTCAACCT CGAATCCCAC TACTCTCACT GGTGAAAGAG
    CCAAAAGTGT TTGCACATGG GAATACGAGA GACCCTGATA TTCTTTCGCT
    GAATTGGCCC GGTTGCCCTT GAGGTGAGGA TACTGATCGG ATCTCTACCA
    CAGGACCACT AACTGCCAAT TGTGAAGATG CCCAGCCTGT GTAAATCACT
    GGATCAATCG AGCCCCTTCC CAAACCCCAG CTCGGAAGAT ACTACACCTT
    GCCACCTTTG GGCTATTCAA GGCTCACACT TTAGCGCAAA AAACTCGCGT
    TTTTATGTTG AAACCATGTG CTTCGGTTTC TGACCTAGTT GCTCGTATCT
    GGTGGCCAAA AGGAGGGGAA AAAAAACTGA GGAATAGGAG AGACCATAAC
    AATCTTGTGC TCTAGCAAGT TGCTCCATTT CATACACAAG TACCATGTAT
    CCTATCTTAC ATTACGTCAA CCCACTTGCT GTATAGCGTG ACTCTTGGCC
    GATG

    Gene models with high sequence identity

    1. AT1G02145.3 [+] show detail - homolog of asparagine-linked glycosylation 12
      E-value: 3e-172; Score: 602.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Alg9-like mannosyltransferase 2.1e-69
    HMMPfam Alg9-like mannosyltransferase 1.3e-43

    See the detailed result >

    AT1G02145.3

    Model type
    Protein coding
    Short Description
    homolog of asparagine-linked glycosylation 12
    Computational Description
    homolog of asparagine-linked glycosylation 12 (ALG12); FUNCTIONS IN: alpha-1,6-mannosyltransferase activity; INVOLVED IN: ER-associated protein catabolic process, protein amino acid terminal N-glycosylation; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); Has 793 Blast hits to 783 proteins in 185 species: Archae - 0; Bacteria - 23; Metazoa - 309; Fungi - 268; Plants - 100; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR