R90296

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
T1	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90296

Determination of introduced cDNA(s)

J013122G04 - Rice Full-length cDNAs - Original: J013122G04

full reading [+] show sequence

ACATTAAGGT TCAAGGTATT ATTGGACCAT GCACATCTTT GGAAAAGAAA 
GGAGCTCTAT GTGCCGACAC AGTTGTTGGT CAAGGAAATA CAACAGCATG 
GAAAATGTGT GGTCTTGACA GGAATACTTC ATTAACAGTA TTTTTTGATG 
TCTCACCGAG TGAGCGGTCA AGCCAACCAG GACATCAGAA TCCCGATCTG 
TATATACAAT TTGTAACAAG TTACCAACAC CCAGAAGGTC AAATGAGGAT 
TAGAGTTACT ACCATATGCA GAAAATGGGT GGATGGATCT ACCAACACAG 
AGGAATTAGT CGAGGGTTTT GACCAGGAAA CTGCAGCTGT TGTGTTGGCG 
AGATACATCT CGTTGAAAAT GGAAATGGAG GAAGAGTTCG ATGCAACACG 
GTGGCTTGAT AGATCCCTCA TACGGCTTTG TTCAAGATTT GGGGATTATC 
GGAAGGATGA TCCATCTTCA TTTAGCTTGC ATTCAAATTT CTCTTTGTTT 
CCTCAGTTTA TGTTTAATCT ACGGCGTTCA CAATTTGTTC AGGTTTTCAA 
TAACAGTCCA GATGAGACAG CTTATTTCCG GATGTTACTC AACCGTGAGA 
GTATCACTAA CTCAGTTGCC ATGATTCAAC CATCATTAAT TTCATTCTCT 
TTTGATTTGC CTCCATCTCC TGTATTCCTC GATGTGGCAT CAATAGCAGC 
AGATCGTATA CTGCTACTTG ATGCATACTT CAGTGTTGTC ATCTTCCATG 
GTATGACAAT TGCTCAGTGG AGAAACATGG GTTACCAGAA TCAACCTGAG 
CATCAGCAAT TTGCACAATT GTTGCAAGCT CCTCACGAGG AGGCTCAAAT 
AATAATTAAA GGACGATTTC CTGCTCCAAG ACTAGTTGTC TGTGACCAAC 
ATGGCTCACA GGCAAGGTTC TTGTTGGCAA AGCTGAACCC ATCGGCTACA 
TATAACTCAG CACATGATGT TCCTCCAGGT TCTGACATCA TATTCACGGA 
TGATGTTAGT TTCCAGGTCT TCTGTGAGCA TCTTCAAAGG CTGGCCGTTC 
AGTCCTAAGG ACATGTATGC AAAGTTGTAC ACCGTATCTG ATAGCTATAT 
TTACTGAGTT TGGTAGGTCT GAGTTGTGGG AGATTTCTGC TTTCCCTTTT 
TTTGACCTCA TGTGTTCTTA TTACATCGTG TCAGGTTTTC CGACATCAGA 
CAATTTTTTC GGGAAATAAT CTTGAAAGCA TGTATAAGTT GTCCCCATAA 
TATTATTTAT CCATCATATA TACTTCTTTA TATTGACCTC ACTGTCATCT 
TAAGGTGTAT AGACAAGTAA GATTTTTGTG GT

Gene models with high sequence identity

AT3G23660.1 [+] show detail - Sec23/Sec24 protein transport family protein
E-value: 1e-150; Score: 529.00

InterPro Scan Digest

Program	Description	E-value
superfamily	SSF81995	3.3e-38
superfamily	SSF82754	3e-56
HMMPanther	PTHR11141	0
HMMPfam	Sec23/Sec24, helical domain	1.1e-27
superfamily	Sec23/Sec24, helical domain	4.6e-48
HMMPfam	Sec23/Sec24 beta-sandwich	1.9e-24
HMMPfam	Gelsolin domain	4.9e-11

See the detailed result >

AT3G23660.1

Model type: Protein coding
Short Description: Sec23/Sec24 protein transport family protein
Computational Description: Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G14160.2); Has 1418 Blast hits to 1403 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 517; Fungi - 392; Plants - 312; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J023028O16 - Rice Full-length cDNAs - Original: J023028O16

full reading [+] show sequence

TTGAAGCCGC GGAATTCCGG AAGCGACTCG CTCTCGTCGG CTCGTCGCAC 
GCGCGAGCCC ACTTTGCCGG CCACCGGGAT GGCGCCGCCG CGGCCCTCGC 
CGGCGGCGAG GCTGCTGAGG GAGTACGGGT GGGACCTGTT GCTCGGATCG 
ATTGCCGCGT TCTACGCCGT CATGGTGCCC TACACCAAGG TGGAAGAGAG 
CTTCAACGTG CAGGCCATGC ATGACATTCT CTACCACAAC TATCATATTG 
AGAAGTATGA TCATTTAGAA TTTCCTGGTG TTGTCCCTCG GTCATTTATA 
GGAGCATTGG TTGTATCTGT TATCTCATCG CCTGCAGTCT TCGTAATGCA 
TTTATGTCAT GTTCAAAAGG TTTATGGTCT TCTAGCAGTT CGGATAGTGT 
TGGGTAGTAT TATCCTGATG ACTTTGAGAC TTCTCCGAGT TCAGGTAAAA 
AGGAAGTTTG GTCATCATGC TGAAGCATTC TATCTGATAC TAACTGCTAC 
CCAGTTTCAC TTATTGTTCT ACTCAACCAG GCCCCTTCCG AATGTCTTAG 
CTTTAGCTTT TGTTAACTTG ACATACTATT TCTGGTTCAA GGGAAACCAT 
CGACGCACAT TACAGGCCCT GATTGTCGCA GCAGTTATTT TTAGGTGTGA 
CATGATTTTG CTTCTTGGTA CAATAGGACT TGCACTTTTG CTGAGCAGGT 
CTATTTCTCT ATTGGAAGCA ATCAAATGTT GTGTAAGCAC TGCCATTATA 
TGCATTGGCT TCACTGTACT GGTTGACTCT ATACTGTGGC GGCGAATCCT 
GTGGCCAGAA TTTGAGGTTT TGTGGTTTAA TTCAGTTCTG AACCGGAGTT 
CAGAGTGGGG TACACATTCC ATCCATTGGT ACTTCACCTC AGCACTTCCA 
CGCTCCATGC TGGTAGCATA TCCTCTTTGC ATGGTCGGTG CTCTTCTTGA 
CAGAAGGATA GTGCCATACA TACTTCCAGT CTTCTCATTT GTTGTGCTTT 
ATTCAAAGCT TCCACATAAG GAGCTTCGCT TCATTATGGC TTCGATTCCC 
ATGCTTAATG TGTCTGCTTC ACTAGCAGCA AGCAGAATAT ATAATAACAG 
AAAGAAAACT GGGTGGAAGT TACTTTATGT TCTCATGATT GGTGGCTTTC 
TTTCCAGTCT AGGATACTCT GGTGTAACTT TCATGGCATC CTACAATAAT 
TATCCTGGTG GATATGCTCT AAAGGCTCTA CATGAAGCAG ATTCTGTAAT 
GAAGGACAAA ATTGTTCACA TTGATGCCTT CACTGCAATG AGTGGAGTTT 
CACGTTTCTG TGAAAGTGAA TATCCTTGGA GATATTCTAA GGAGGAAAAA 
ATTTCCATCG AGGAATATCA GGAAAGAAAT TTCACATATC TGCTGAATGA 
ACACCGCCAT ATCAGTGGCT ACAAGTGCTT GTTTGCCGTG GATGGATTCT 
CCAGAGCGAA AATTCAACCT CGAATCCCAC TACTCTCACT GGTGAAAGAG 
CCAAAAGTGT TTGCACATGG GAATACGAGA GACCCTGATA TTCTTTCGCT 
GAATTGGCCC GGTTGCCCTT GAGGTGAGGA TACTGATCGG ATCTCTACCA 
CAGGACCACT AACTGCCAAT TGTGAAGATG CCCAGCCTGT GTAAATCACT 
GGATCAATCG AGCCCCTTCC CAAACCCCAG CTCGGAAGAT ACTACACCTT 
GCCACCTTTG GGCTATTCAA GGCTCACACT TTAGCGCAAA AAACTCGCGT 
TTTTATGTTG AAACCATGTG CTTCGGTTTC TGACCTAGTT GCTCGTATCT 
GGTGGCCAAA AGGAGGGGAA AAAAAACTGA GGAATAGGAG AGACCATAAC 
AATCTTGTGC TCTAGCAAGT TGCTCCATTT CATACACAAG TACCATGTAT 
CCTATCTTAC ATTACGTCAA CCCACTTGCT GTATAGCGTG ACTCTTGGCC 
GATG

Gene models with high sequence identity

AT1G02145.3 [+] show detail - homolog of asparagine-linked glycosylation 12
E-value: 3e-172; Score: 602.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Alg9-like mannosyltransferase	2.1e-69
HMMPfam	Alg9-like mannosyltransferase	1.3e-43

See the detailed result >

AT1G02145.3

Model type: Protein coding
Short Description: homolog of asparagine-linked glycosylation 12
Computational Description: homolog of asparagine-linked glycosylation 12 (ALG12); FUNCTIONS IN: alpha-1,6-mannosyltransferase activity; INVOLVED IN: ER-associated protein catabolic process, protein amino acid terminal N-glycosylation; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); Has 793 Blast hits to 783 proteins in 185 species: Archae - 0; Bacteria - 23; Metazoa - 309; Fungi - 268; Plants - 100; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link: InterPro Scan - TAIR