R90313

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90313

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • variegated (PATO:0000335)
    (Rosette leaf::Color::variegated)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90313

Determination of introduced cDNA(s)

  • J013117F22 - Rice Full-length cDNAs - Original: J013117F22

    full reading [+] show sequence

    Nucleotide sequence: J013117F22 - full reading 
    GAGTAGCAGA GCTCAGCGTT TGGAGCGAGA TGATGAGCAG CAGCAGCAGC 
    TTGGTGTCCG CCATTTCTGC GTCACCGTCT GCCACTGCAA AAGCTCGCCT 
    TCGTCATGAC GATGCAGCAA CAGCAACAGG AGCAGCAGCA GCAGCAGCAG 
    TAGCAGCGAG GCAGCTAAAG ACGGAGCATG GCGGCTGCTG CTGCTGCCGG 
    AGCAGAGGCC GGGCGGTGGT GGCGAGGGCG GGGCCCGGGC CACTGACGGA 
    GATCGAGCCC GACCTGAACG AGGACCCCAT TGATAAGTGG CGCACCAACG 
    GCGTCAGCCC GGACGACTTC GAGTATGGAG TGTATGATGG TCACCACACA 
    TATAATGAAA CCCAAGATAA GAAGGGCTTT TGGGAGGATG TCTCTGAGTG 
    GTACCAAGAA GCTGAACCTC CTCAGGGCTT CCAAGCACTG ATCTCCTGGT 
    TGTTTCCTCC TGCAATCATC CTTGGCATGG CCTTCAATGT TCCGGGGGAG 
    TACCTCTACA TCGGCGCAGC AGTGTTCGTC GTCGTGTTCT GCGTTATCGA 
    GATGGACAAA CCGGACAAGC CACACAACTT TGAGCCGGAG ATCTACATGA 
    TGGAGAGATC GGCTCGCGAC AAGCTCATCG CCGACTACAA CACCATGGAC 
    ATCTGGGACT TCAACGAGAA GTACGGCGAG CTCTGGGACT TCACCGTCGA 
    CAGAAGAGAT GAGATTGTGA AATCGTCTTA GATATGGTAT TCAGAAATGG 
    GGGGTCACAT TTGTTAGATG CAGCTGCAGA AACAGTTCAG AAAATCAGAA 
    CCACTCCAAA GAAAAGCAGG GTGGCAAAGC TGCAAGATGA GTCTCTTCAA 
    AATAAAGAAC TTTGAGATGA AATGATGTGT GTATGGATCA TCTCATCTAC 
    TGTAAGGCCT GCTTTCTATG TCTCTGACAG TCTCAACTCT GAAGTTCTCA 
    GCCAGGTACA AAAGGAGACT GAAAATTCTG TCATGTGTAT TTTGTTTTCC 
    CCCCAATGTA ATGGAGAAAA TCCTGTGAAT GACATCACTA ATTCAATAGA 
    TATATATAGT AGTATAATGG AATAACTTTG GCATCAGCCT CC

    Gene models with high sequence identity

    1. AT5G43750.1 [+] show detail - NAD(P)H dehydrogenase 18
      E-value: 3e-56; Score: 216.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G43750.1

    Model type
    Protein coding
    Short Description
    NAD(P)H dehydrogenase 18
    Computational Description
    NAD(P)H dehydrogenase 18 (NDH18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR