R90314

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90314

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90314

Determination of introduced cDNA(s)

  • J023115E06 - Rice Full-length cDNAs - Original: J023115E06

    full reading [+] show sequence

    Nucleotide sequence: J023115E06 - full reading 
    GATATTCTCA TCTGATTACT CCGCGGCGGC GGCGGCGGCG GGAGCGGCAT 
    CTCCTACGAG ATTCCTCTCT TGATGGTATC GTTGAACAAG CCAACTAAGC 
    ACAAGGAGTT GTCTCGGGTG ATGAGATAAT TTGGTTAAGG AAGGTAGGAA 
    ACAGTAAATT CAATGGGCAA TCCTTCTATT CTCACGGAGG ATTTAGGCGA 
    TACGTCTGAC TTTGAGGTTG ATGGCGTCGA GAACCTCACG GAGAATGATG 
    TCAGTGATGA GGAGATTGAT GCCGAGGAGC TGGCCCGACG GATGTGGAAA 
    GACAAGATCA AGCTGAAGAG GATCAAGGAG AGGCAGCAGA AGCTTGCTCT 
    GCAGCAGGCA GCACTAGAGG AGTCCAAAAC AAAGAAGATG TCTGAGCAGG 
    CTCTCCGCAA GAAGACGGCG AGAGTCCAGG ATGGGATCTT GAGGTACATG 
    CTCAAGCTGA TGGAGGTGTG CAATGCTCGT GGGTTTGTTT ATGGGATCAT 
    TCCTCATAAA GGGAAGCCTG TCAGTGGTGC ATCGGATAAC ATTAGAGCTT 
    GGTGGAAGGA GAAGGTTCGG TTCGATGTGA ATGGGCCGGT TGCCATTGCA 
    AAGTATGAGG TTAAGAACTC AATGCTGGTT GATGCTAAGC GCAGAGGGGT 
    CTTGAACCAG CATAGCTTGA TGGATCTCCA GGATGCTACC CTGGGATCAT 
    TGCTCTCATC GTTGATGCAG CATTGCAGCC CGCAGCAGCG CAAGTACCCA 
    CTGGATAAGG GTGTCCCTCC CCCATGGTGG CCATCAGGAA ATGAGGATTG 
    GTGGATTTCT TTAGGCCTTC CAATGGGAAT ATCACCACCA TACAGAAAAC 
    CGCATGATCT TAAGAAGGTT TGGAAGGTTG GCGTGCTGAC GGGTGTGATC 
    AAACACATGG CCCCAAACTT TGATAAGATC AGGAATTGTG TAAGGAAATC 
    GAAGTGCTTG CAAGACAAAA TGACTGCTAA AGAGAGCTTG ATTTGGCTGG 
    GAGTTCTTCG AAGAGAGGAA ATATATTTTC GCAGTTCTGA CAATGTTGGA 
    TCACAGATTA CACACCGTAG TTCTCGTGAG GGAAAAAGTG ATGATATATA 
    TAGCAGCAGT GATGAGTATG ATGTCGACCA TTTGGAGGAA CCTCCTCGCT 
    CTTCATCATC CAAAGATAAT GTGGGGCGTC GTCAGCCAAC TGCGCAGATC 
    AGAGAGGAGC ATACCTCTAG TCGACACAAC AGAGGACGCC ATGATCAGCA 
    ACCCAATCAA GTACTTCCTA GCAATGAAGG GACCAATGAA TCAAGGAAGA 
    GAAAGAGACC TAGTGGTCAT TTACTTACTG CTGAATCTGA GGTTGAGGTA 
    ACACAAAAAG ATGACAATCA ACTAGCCATT GTGAGCAATG CATTGCCCAA 
    TATGAGCAGA ATAAACCAAA CGGAGATGAT GGGCATGGCT AACCAGATGA 
    CAAGCCTCAG CCATGTCAAT ACAACTGAAA CTCTACAGCA TCAATATGTT 
    CAAGGGAACT TCGTATCTTC TCCTGCTGCT GTGGTTAATA ACTATAACAG 
    CAACCAGATT ACAAATGTTA ATCCTTCAAG GATTTATATG GGATATCAGC 
    CTTTAGCATG CCAAAATAAT GGTCACACAA ATCCATGGTC TGAAGACACT 
    TTTCAGGTTG ATGTTGGTCC ACCACCTATT GGTTTTACTA CTAATTCTTC 
    GTCAGGTGGT AATCATTCTT TTCCCATGAA ACAATCACTA CCAAAATCTA 
    TAGATGATCA TGTGCCTATT ACGGAGACAG GGGTGTTGGC TGATAGCAGT 
    TCATATGGTT ATCATATCAC AGCCACAGGT AGTAGGAATT CAACCTCTGT 
    TGCTGGCCAT GGAAATCAGC TCATGGGAGA TCCTTTCGAC AGTGGTACTG 
    CTGATAAGTT CAATGGGAAT TCGTTTGATG GATTGCCTTT TGACTTCATT 
    GGTAGTAGTC CAATCCCTGA CATCGGTGTA TTGCTAGATG ATGATGATAT 
    AATGCCATAT CTGGGAACAT AACCTAGGCA ACTCTTTTGC AATTGTAAGA 
    ACTGCGACAT CCAGAAATGT AAATGGTGGC AGAAGTTCCT GTATCGTTCA 
    TTAGCTAATC GCTGAGAACT TGAGAAGGGC GCGCTCATCA TGGCATGCTG 
    GTGTTCCGCT TAACCTGCTG CAACCAGTGA AGGATGCGTC GTGCCAATGA 
    TCTGTAATTT GTACCTATCG CTTTTAATTA GCCTGTTCTG GATTATTTAG 
    CCTGGCTGTA AAAAAGCTCA TAGAAACTCG CTTAGCTGGA GAATTTCCTG 
    CAATGCTGGA TGGTTGTATA CATTTTTACC TGTGCTACCA TGTTAATTTT 
    GCTCAGTTAC TCATAGATAA ATCTTGATGT ATATGAGACA TGTTCATTGC 
    AGCTAGCTCA GACATAATAA TACCTGAATT CTTGC

    Gene models with high sequence identity

    1. AT1G73730.1 [+] show detail - ETHYLENE-INSENSITIVE3-like 3
      E-value: 7e-105; Score: 379.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.3e-60
    Coil coiled-coil 0
    HMMPfam Ethylene insensitive 3 3.5e-127

    See the detailed result >

    AT1G73730.1

    Model type
    Protein coding
    Short Description
    ETHYLENE-INSENSITIVE3-like 3
    Curator Summary
    Encodes a putative transcription factor involved in ethylene signalling. Isolated DNA binding domain has been shown to bind DNA in vitro.
    Computational Description
    ETHYLENE-INSENSITIVE3-like 3 (EIL3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: ethylene mediated signaling pathway, cellular response to sulfate starvation, regulation of sulfur metabolic process, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ethylene insensitive 3 (InterPro:IPR006957); BEST Arabidopsis thaliana protein match is: Ethylene insensitive 3 family protein (TAIR:AT3G20770.1); Has 298 Blast hits to 298 proteins in 81 species: Archae - 0; Bacteria - 53; Metazoa - 2; Fungi - 1; Plants - 234; Viruses - 4; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR