R90314

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90314

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90314

Determination of introduced cDNA(s)

  • J023115E06 - Rice Full-length cDNAs - Original: J023115E06

    full reading [+] show sequence

    Nucleotide sequence: J023115E06 - full reading
    GATATTCTCA TCTGATTACT CCGCGGCGGC GGCGGCGGCG GGAGCGGCAT 
    CTCCTACGAG ATTCCTCTCT TGATGGTATC GTTGAACAAG CCAACTAAGC
    ACAAGGAGTT GTCTCGGGTG ATGAGATAAT TTGGTTAAGG AAGGTAGGAA
    ACAGTAAATT CAATGGGCAA TCCTTCTATT CTCACGGAGG ATTTAGGCGA
    TACGTCTGAC TTTGAGGTTG ATGGCGTCGA GAACCTCACG GAGAATGATG
    TCAGTGATGA GGAGATTGAT GCCGAGGAGC TGGCCCGACG GATGTGGAAA
    GACAAGATCA AGCTGAAGAG GATCAAGGAG AGGCAGCAGA AGCTTGCTCT
    GCAGCAGGCA GCACTAGAGG AGTCCAAAAC AAAGAAGATG TCTGAGCAGG
    CTCTCCGCAA GAAGACGGCG AGAGTCCAGG ATGGGATCTT GAGGTACATG
    CTCAAGCTGA TGGAGGTGTG CAATGCTCGT GGGTTTGTTT ATGGGATCAT
    TCCTCATAAA GGGAAGCCTG TCAGTGGTGC ATCGGATAAC ATTAGAGCTT
    GGTGGAAGGA GAAGGTTCGG TTCGATGTGA ATGGGCCGGT TGCCATTGCA
    AAGTATGAGG TTAAGAACTC AATGCTGGTT GATGCTAAGC GCAGAGGGGT
    CTTGAACCAG CATAGCTTGA TGGATCTCCA GGATGCTACC CTGGGATCAT
    TGCTCTCATC GTTGATGCAG CATTGCAGCC CGCAGCAGCG CAAGTACCCA
    CTGGATAAGG GTGTCCCTCC CCCATGGTGG CCATCAGGAA ATGAGGATTG
    GTGGATTTCT TTAGGCCTTC CAATGGGAAT ATCACCACCA TACAGAAAAC
    CGCATGATCT TAAGAAGGTT TGGAAGGTTG GCGTGCTGAC GGGTGTGATC
    AAACACATGG CCCCAAACTT TGATAAGATC AGGAATTGTG TAAGGAAATC
    GAAGTGCTTG CAAGACAAAA TGACTGCTAA AGAGAGCTTG ATTTGGCTGG
    GAGTTCTTCG AAGAGAGGAA ATATATTTTC GCAGTTCTGA CAATGTTGGA
    TCACAGATTA CACACCGTAG TTCTCGTGAG GGAAAAAGTG ATGATATATA
    TAGCAGCAGT GATGAGTATG ATGTCGACCA TTTGGAGGAA CCTCCTCGCT
    CTTCATCATC CAAAGATAAT GTGGGGCGTC GTCAGCCAAC TGCGCAGATC
    AGAGAGGAGC ATACCTCTAG TCGACACAAC AGAGGACGCC ATGATCAGCA
    ACCCAATCAA GTACTTCCTA GCAATGAAGG GACCAATGAA TCAAGGAAGA
    GAAAGAGACC TAGTGGTCAT TTACTTACTG CTGAATCTGA GGTTGAGGTA
    ACACAAAAAG ATGACAATCA ACTAGCCATT GTGAGCAATG CATTGCCCAA
    TATGAGCAGA ATAAACCAAA CGGAGATGAT GGGCATGGCT AACCAGATGA
    CAAGCCTCAG CCATGTCAAT ACAACTGAAA CTCTACAGCA TCAATATGTT
    CAAGGGAACT TCGTATCTTC TCCTGCTGCT GTGGTTAATA ACTATAACAG
    CAACCAGATT ACAAATGTTA ATCCTTCAAG GATTTATATG GGATATCAGC
    CTTTAGCATG CCAAAATAAT GGTCACACAA ATCCATGGTC TGAAGACACT
    TTTCAGGTTG ATGTTGGTCC ACCACCTATT GGTTTTACTA CTAATTCTTC
    GTCAGGTGGT AATCATTCTT TTCCCATGAA ACAATCACTA CCAAAATCTA
    TAGATGATCA TGTGCCTATT ACGGAGACAG GGGTGTTGGC TGATAGCAGT
    TCATATGGTT ATCATATCAC AGCCACAGGT AGTAGGAATT CAACCTCTGT
    TGCTGGCCAT GGAAATCAGC TCATGGGAGA TCCTTTCGAC AGTGGTACTG
    CTGATAAGTT CAATGGGAAT TCGTTTGATG GATTGCCTTT TGACTTCATT
    GGTAGTAGTC CAATCCCTGA CATCGGTGTA TTGCTAGATG ATGATGATAT
    AATGCCATAT CTGGGAACAT AACCTAGGCA ACTCTTTTGC AATTGTAAGA
    ACTGCGACAT CCAGAAATGT AAATGGTGGC AGAAGTTCCT GTATCGTTCA
    TTAGCTAATC GCTGAGAACT TGAGAAGGGC GCGCTCATCA TGGCATGCTG
    GTGTTCCGCT TAACCTGCTG CAACCAGTGA AGGATGCGTC GTGCCAATGA
    TCTGTAATTT GTACCTATCG CTTTTAATTA GCCTGTTCTG GATTATTTAG
    CCTGGCTGTA AAAAAGCTCA TAGAAACTCG CTTAGCTGGA GAATTTCCTG
    CAATGCTGGA TGGTTGTATA CATTTTTACC TGTGCTACCA TGTTAATTTT
    GCTCAGTTAC TCATAGATAA ATCTTGATGT ATATGAGACA TGTTCATTGC
    AGCTAGCTCA GACATAATAA TACCTGAATT CTTGC

    Gene models with high sequence identity

    1. AT1G73730.1 [+] show detail - ETHYLENE-INSENSITIVE3-like 3
      E-value: 7e-105; Score: 379.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.3e-60
    Coil coiled-coil 0
    HMMPfam Ethylene insensitive 3 3.5e-127

    See the detailed result >

    AT1G73730.1

    Model type
    Protein coding
    Short Description
    ETHYLENE-INSENSITIVE3-like 3
    Curator Summary
    Encodes a putative transcription factor involved in ethylene signalling. Isolated DNA binding domain has been shown to bind DNA in vitro.
    Computational Description
    ETHYLENE-INSENSITIVE3-like 3 (EIL3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: ethylene mediated signaling pathway, cellular response to sulfate starvation, regulation of sulfur metabolic process, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ethylene insensitive 3 (InterPro:IPR006957); BEST Arabidopsis thaliana protein match is: Ethylene insensitive 3 family protein (TAIR:AT3G20770.1); Has 298 Blast hits to 298 proteins in 81 species: Archae - 0; Bacteria - 53; Metazoa - 2; Fungi - 1; Plants - 234; Viruses - 4; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR