R90329

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90329

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90329

Determination of introduced cDNA(s)

  • J023105D14 - Rice Full-length cDNAs - Original: J023105D14

    full reading [+] show sequence

    Nucleotide sequence: J023105D14 - full reading 
    GTCACACAAC CACCACTCAC CACCAACATG GCGACGACGA CGGCGGCGGC 
    GATGGTGGTG GCAATGTCGG TGCTGCTGCT GGGTGGCGGC GAGGCGGCGG 
    CGCCGCGGAA GCCGGTGGAC GTGGCGTTCG AGAAGAACTA CGTGCCGACG 
    TGGGCGGAGG ACCACATCCA CTACGTGGAC GGCGGGCGCG AGGTGCAGCT 
    CTACCTCGAC AAGTCCACCG GCACCGGCTT CCAGACCCGG GGCTCCTACC 
    TCTTCGGCCA CTTCAGCATG CACATCAAGC TCGTCGCCGG CGACTCCGCC 
    GGCACCGTCA CCGCCTTCTA CCTGTCGTCG CAGAACTCGG AGCACGACGA 
    GATCGACTTC GAGTTCCTGG GGAACAGGAC GGGGGAGCCG TACATCCTGC 
    AGACGAACGT CTTCTCCGGC GGGAAGGGGG ACCGGGAGCA GAGGATCTAC 
    CTCTGGTTCG ACCCCACCAA GGACTACCAC TCCTACTCCG TCCTCTGGAA 
    CCTCTACATG ATCGCGTTCT TCGTGGACGA CACGCCGATC AGGGTGTTCA 
    AGAACAGCAA GGACCTGGGC GTGCGGTACC CGTTCAACCA GCCGATGAAG 
    CTCTACTCCA GCCTGTGGAA CGCCGACGAC TGGGCCACCC GCGGCGGGCG 
    GGAGAAGACC GACTGGTCGC GGGCGCCGTT CGTCGCCTCC TACCGGGGCT 
    TCCACGTCGA TGGCTGCGAG GCGTCGGCGG AGGCCCGGTA CTGCGCCACC 
    CAGGGCGCCC GGTGGTGGGA CCAGCCGGAG TTCCGCGACC TCGACGCCGA 
    CCAGTACCGC CGCCTCGCCT GGGTCCGCAA GACGCACACC ATCTACAACT 
    ACTGCGACGA CCGCGAACGC TACCCCGCCA TGTCGCCCGA GTGCCACCGC 
    GACCGCGACG CCTGAGATCT CATCGAGATC TGTGATCGAT GCTTGCTGGC 
    CGTCCGATGG ATGGATGGAT GGATGGG

    Gene models with high sequence identity

    1. AT5G13870.1 [+] show detail - xyloglucan endotransglucosylase/hydrolase 5
      E-value: 4e-134; Score: 474.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 16 7.8e-60
    HMMPfam Xyloglucan endo-transglycosylase, C-terminal 1.5e-18
    Gene3D Concanavalin A-like lectin/glucanase, subgroup 3.2e-107
    PatternScan Glycoside hydrolase, family 16, active site 0
    HMMPIR Xyloglucan endotransglucosylase/hydrolase 2.7e-173
    superfamily Concanavalin A-like lectin/glucanase 1.1e-102

    See the detailed result >

    AT5G13870.1

    Model type
    Protein coding
    Short Description
    xyloglucan endotransglucosylase/hydrolase 5
    Curator Summary
    EXGT-A4, endoxyloglucan transferase,
    Computational Description
    xyloglucan endotransglucosylase/hydrolase 5 (XTH5); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 4 (TAIR:AT2G06850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR