R90330

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90330

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90330

Determination of introduced cDNA(s)

  • J013068L12 - Rice Full-length cDNAs - Original: J013068L12

    full reading [+] show sequence

    Nucleotide sequence: J013068L12 - full reading 
    GGGTTGATCT CTGAAGAGTT CAGAATTCAG AGCAGAAGTA GTATGAAGCT 
    TCTTGACACA TGCATGCCAA AACATGGCTC CGTTTGGAGA AGGCTTAGCA 
    ATTAGCATGT TTGAGGATGT GCAAGAGGAG GTTTATCCAG GACAATCTAT 
    AAAGTGCACA CCATGGAACC TGACAACTTG AAGCTCACCG AATTTCTTGG 
    TTTCACTCAT CATGCATAAG CCAGCAAAGT AGCCAACACA ATCGAAAATA 
    CCAAAACCGA GAGTGTCAAT GGTTGTTTTG TCAGAGGACT TGCATTAGGC 
    AACCATGGAT ATGCATCCGG AGGTGGCATG ACACAATTAT CACCATTGAA 
    GTACACGCGG TGTGGGAAGG CCCATCCCTT GTCAAAGGTG AAGTCCTTGG 
    AATCCTTACG CAGAAGAAGT TCTGACTGTG CATTTCCAAG TGGACCAGCT 
    TGCATGAGCA AATCGTTATA GAACTTAACT CCCCAGAACA TCGCAGTATC 
    ATCTAAAATA GAAGGAATAA ACTTCATCAG AGAAAGAGAG AGAGAGAGAG 
    AGATAAAGGA ACGTATTACA AGTGCACTCC AATTTTCTTA AATAAAGGAG 
    AACAGTTTGT AAATTGACTT ACTTATCTTG CTTCCATATG GAGTAAGTGG 
    CTTGTAGTTG AAGCTAAACA GCTGGGTGAT ATTATTGAAG TTAGGATGTT 
    GAGCGACCAA ATTCCACTGT GTGTAATTCA TGCGGTAGTT GAAGTTCGTA 
    ATCGTGATCT TCACTCTCCA ATATTCCTTA TAGTTGAGTT TCACATGCCA 
    GTGGATTCTG ATCGGGCACA TGTGAGAAGT ACATTGGACA AGAGGCTGAC 
    CGGTCCATTT GCCAGGGCCA TCAATGGCAG ATTGTAAATA AGGTGAATTC 
    TCACTGTGGA AATGCATGGA ACTTGTTAGC AATTTTGCAG AAAAGTTGGG 
    CCTCAACAAG AAGCGAAGTA AGAGTTTTGG TTTTATTAAC TCACTTTACA 
    CAGCTTCCAG GACTTGTCCC ATTGTTTTGG CAGCCACAAG AGCATGTTGG 
    GCAGTTCACA ATTGTGTCAT TATAAAATGA TGAGAGAGAT ACACAGCAGG 
    AAGGAGTCTT CTGAGCAAGA AATTGGGAGT ATGTGCAGGT CACATTCCAT 
    GTCACTGCAA ACAGATTTTA TTTTTGTTAA GAAACAAAAA ACAAAAATGA 
    ACTTTATGGT ATAAGATTTT GACAAATTTA ACTTCTATAT GGAGCCACTA 
    TGATGCATGT CTGCATTTGA CGAATATTAT TTGCTAGAGA ATAATATTAA 
    CTGAATTAGC TGTATTCTAT TAGGCCAACA TGCCAAGTAA TATAACCTAT 
    TATCAACTAT TATTC

    Gene models with high sequence identity

    1. AT5G60920.1 [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
      E-value: 1e-93; Score: 103.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G60920.1

    Model type
    Protein coding
    Short Description
    COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
    Curator Summary
    Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
    Computational Description
    COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR