R90336

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1	rosette leaf (PO:0000014)	decreased width (PATO:0000599) (Rosette leaf::Shape::narrow) dark green (PATO:0001249) (Rosette leaf::Color::dark) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90336

Determination of introduced cDNA(s)

J033099C09 - Rice Full-length cDNAs - Original: J033099C09

full reading [+] show sequence

GATTGTCCTC CTCTCCACTA CACTACACTG TGCACTTCTG CAGGTTGCAA 
TGGCCACCAT CCCGGAGGTG CCGGCGAGCG AGCTTATCCA GACCATGCCG 
CGCGTCGGCA TGGGCACGGC GGCGTTCCCC TTCACCTCCT CGGAGGACAC 
CACCGCCGCC ATGCTCCGCG CCATCGAGCT CGGCTACCGC CACTTCGACA 
CGGCCAGGAT TTACGCCACC GAGGGCTGCG TCGGCGAGGC AGTCGCGGAG 
GCCGTCCGGC GTGGCCTCAT CGCCTCCCGC GCCGACGTGT TCGTCACCTC 
CAAGATCTGG TGCAGCGACC TGCACGCCGG CCGCGTCGTG CCGGCGGCGA 
GGGAGACGCT CCGCAACCTC GGGATGGACT ACGTCGACCT GCTCCTTGTC 
CACTGGCCGG TGAGCCTCAC GCCGGGCAAC TACGACTTCC CGTTCCCCAA 
GGAGGTGATC CTGCCGTCGT TCGACATGGA GGGCGTGTGG CGCGGCATGG 
AGGAGTGCCA CCGCCTGGGC CTCGCGCGCG CCATCGGCGT CAGCAACTTC 
TCCGCCAAGA AGCTGGAGCA GCTGCTGTCG CTCGCCGCCG TGCGGCCGGC 
GGTGAACCAG GTGGAGGTGA ACCCGATGTG GCAGCAGAGG ACGCTGCGGG 
AGGTGTGCCG GCGGGAGGGG GTGCAGCTGT GCGGGTACTC GCCGCTGGGG 
GCGAAGGGCA CGCCGTGGGG CAGCGCCGCC GTGATGGACT CCGGCGTCCT 
GCAGGAGATC GCCGGAGCCA AGGGCAAGAC GCTTGCTCAG ATTTGTTTGA 
GGTGGTTGTA CGAGCAAGGT GATGTTTTAT TGGTGAAGAC ATATAATGAG 
AAGAGAATGA AGGAAAATCT GGACATTTTC AACTGGGAGC TCACAGATGA 
AGAGAGGGAG AGGATCAGTC AGCTGCCCCA ACTGAGGGGC CTGCCTGGAT 
TGGAATTCAT CTCTGACCAT GGGCCTTACA AATCAGTTGA AGATTTGTGG 
GATGGTGACG TCTAGCAAGC TACTTAGATA CAGTGGAGTA TATATCTAAA 
TAATCATGAT GGATCATGAT GTGGATCTAT CTTAATTATG TGCGGCAGGC 
ATGGGCACGG CACCATTCCC GTACACGTTC TGCGATCAAT TAATGTATGG 
ACCATACATG TATATTAATT GCTGTATACC TATCCACTTA TTTAAAACAC 
GTCGACACGT TCACG

Gene models with high sequence identity

AT1G59960.1 [+] show detail - NAD(P)-linked oxidoreductase superfamily protein
E-value: 2e-93; Score: 339.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	ALDO-KETO REDUCTASE	1.5e-91
HMMPanther	Aldo/keto reductase	1.5e-91
PatternScan	Aldo/keto reductase, conserved site	0
PatternScan	Aldo/keto reductase, conserved site	0
PatternScan	Aldo/keto reductase, conserved site	0
Gene3D	Aldo/keto reductase	9e-85
superfamily	Aldo/keto reductase	1e-85
HMMPfam	Aldo/keto reductase	1.3e-55
FPrintScan	Aldo/keto reductase subgroup	2.3e-44
FPrintScan	Aldo/keto reductase subgroup	2.3e-44
FPrintScan	Aldo/keto reductase subgroup	2.3e-44
FPrintScan	Aldo/keto reductase subgroup	2.3e-44
FPrintScan	Aldo/keto reductase subgroup	2.3e-44

See the detailed result >

AT1G59960.1

Model type: Protein coding
Short Description: NAD(P)-linked oxidoreductase superfamily protein
Computational Description: NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G59950.1); Has 18939 Blast hits to 18918 proteins in 2314 species: Archae - 331; Bacteria - 12289; Metazoa - 1736; Fungi - 1658; Plants - 1296; Viruses - 0; Other Eukaryotes - 1629 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033075C14 - Rice Full-length cDNAs - Original: J033075C14

full reading [+] show sequence

GGCAGTCACG CGCACTCTCA CTCACACGGA GAGAGAGAGA GAGAGAGACT 
AGACTAGTAG TACCAATTAA TGGCGGCGCT CTCCTCCTGC TTACTCGCCG 
CCGTCCGACC TCATCCTCCA CCTCCACCTC GACCGCTCTC CCCTTCCTTC 
ATCCCCTCTG CCCTCCGCCA CCGCCACCGC CTCAGCCAAG CGCCGCCCCT 
CGCCACCTCT CTCCCACGAC CACGACCACC ATGGTGCCGC TTCTCCGCCT 
CCTCGCCGCC ACCGCCACCC GACGACCCTG ACGACTACGA GCTGTTGGAC 
ACGACAGGAA ATTGTGATCC TTTATGCTCC GTTGATGAAG TTAGCTCACA 
GTATTTTGAA GCTAACTACA AGCCAAAAAA TGATCTTCTT AAAGCTTTAA 
CTATAATAGC AACAGCTTTG GCTGGGGCAG CTGCAATAAA CCATTCCTGG 
GTTGCTGAAC ATCAGGACAT TGCAATGGTG CTAGTGTTTG CTCTCGGTTA 
TGCAGGTATC ATATTTGAGG AATCACTAGC GTTTAACAAA AGTGGAGTTG 
GATTGCTCAT GGCCGTTTGC CTATGGGTTA TCAGAAGTAT CGGGGCTCCA 
TCTACTGATG TAGCAGTTCA AGAGTTGAGT CATACAACCG CCGAAGTTAG 
TGAAATAGTC TTTTTCTTGC TCGGTGCAAT GACCATTGTT GAGATTGTTG 
ATGCACATCA AGGATTTAAG CTAGTGACTG ACAATATATC TACTCGAAAT 
CCAAGAACTC TTCTCTGGGT GATAGGGTTT GTAACTTTCT TCTTGAGTTC 
TATCCTTGAC AATTTGACTT CCACTATTGT GATGGTTTCA TTGCTTCGGA 
AACTAGTACC TCCATCAGAG TACAGAAAAT TGTTAGGCGC TGTTGTTGTG 
ATATCTGCAA ATGCTGGGGG TGCATGGACA CCAATTGGTG ATGTGACGAC 
CACTATGTTG TGGATTCATG GTCAGATTAC AACGTTGAAC ACAATGCAGG 
GCTTGTTTCT TCCCTCAGTT GTTTCATTGG CAGTTCCACT GGCTCTGATG 
TCCCTCACGA GTGAAGCAAA TGGATCTTCT CAGAAATCTT CCAGCTTGCT 
GTCATCAGAG CAGATGGCTC CTCGAGGACA ACTTGTATTT GCTGTTGGCC 
TTGGAGCCTT AGTGTTTGTT CCAGTGTTTA AAGCTCTCAC TGGGCTGCCA 
CCTTTCATGG GCATGATGCT TGGTCTTGCA ATTCTTTGGA TCCTGACAGA 
TGCGATACAT TATGGGGACT CTGGAAGGCA GAGATTGAAA GTTCCACAAG 
CGCTGTCACG GATTGATACA CAAGGAGTTC TATTTTTCTT AGGAATTCTT 
ATGTCAGTTG GCAGCTTGGA ATCTGCTGGC ATTTTGAGGC AGTTGGCGAA 
CTATCTCGAT GCCAATATTC CGAATGCCGA CCTTATTGCA AGCGCTATCG 
GTGTAGCATC AGCAATTATA GACAATGTTC CACTTGTTGC TGCAACAATG 
GGGATGTATG ACCTGACTTC ATTTCCTCAA GATGCGGACT TTTGGCAGCT 
TATTGCGTTC TGTGCTGGTA CGGGTGGTTC TATGCTTATC ATTGGCTCTG 
CAGCAGGTGT GGCTTTCATG GGAATGGAAA AGGTGGATTT CTTTTGGTAT 
TTCCGCAAGG TAAATTGAAC TTTTACTCTA ATAATAAGTG GAGCTGTGGA 
ACAACTTACA CAATACAGAA TCGTATGTTA CAGAACAAGA AACTTATTCG 
GTGTGGTTGA TATTTCCCTG TCGAACTGTT AAATCCAATC CATATATGCT 
CATCATATCT TTCAGTAATT CTGATAAGGG CTGGGAACAG GGAAAAAAAT 
TGATTTTGGA CTGCAGCTTG GTTTAGCTTC TCTATAGGAA AACAATTGTG 
ATATCATGCA TTGATGGTAC GTACGTAAGG GCAAGATTGT GCTTTTCTGT 
AAGGGATGAA ATACCATGCT TTCATTAATT AGTTATAGTT TTATGTTTTA 
AACCAAGCTC GCTTATTTGT TTACGGCATA ACTTTGTTTA TAGATTTGCA 
CAAGTGTCTT CTCAATGATT TGGATGTAAA GTAGATTGCC CACCTTTCTT 
CAACTATTTG TGCTTTTCGG AGAATTGCAA CACTAATTTA TAAGTCCATC 
GTGCTGTTAG TGTCATCTCA GAACCTCAAA TCCTTAACGA TTGGTAGTAA 
GTTGTGTGTA CTTGTACGGA ATTAGCAACT ACAAGTGACT AGGCCCGTAG 
AATATATGTA AACATTGAAA TGATCTATGT CTTTTGAGTC CACATTGTAT 
TTATACCGCT TGGTTTTGCA GGTGAGTGGT TTTGCCCTTG CAGGTTATGC 
AGCTGGTATC ATCACTTATC TAGCTGCACA AAATCTCCCT CTATCCCTTC 
CCACTTCACT AGCCGAGATC CCATTTATCT CGGGGTCATG AAAGGGTGAC 
CAGATTCAGG TATGGAAATG GACATATTTT ATTGTCTGGC CAGCTTATGT 
AAGCATAATC AGGATGTGTT GGCAAAGAAA AGATGTCCCA TGATTACATG 
GGATGGAATA AACGAAAAAT AAATATATGC CCTGATCTCC AACCTCCAAG 
TTTCCCAACA TTGACCGGAA GGCTTTGGGG TGCTGGTGAA CTATGGTATG 
CTAAGAGAGG AGCGATTTTG ATAACACAAG CTTAGAGGCT AGAGCTGCAC 
GCTTGTAATT CACGAATTCT ATTCTATCTT GTTGAGAAGA AAAGAGGAGC 
TGCACCTTGT GTAAAATTTG AAGATCCTGA AATCATATCA TCACTGGGTT 
TATTTTTGCC C

Gene models with high sequence identity

AT3G19490.1 [+] show detail - sodium:hydrogen antiporter 1
E-value: 0; Score: 714.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Na+/H+ antiporter NhaD-like	2.5e-249
HMMPanther	CATION TRANSPORTER RELATED	2.5e-249
HMMPanther	Na+/H+ antiporter NhaD-like	1.4e-08
HMMPanther	CATION TRANSPORTER RELATED	1.4e-08
HMMPfam	Divalent ion symporter	1.4e-18

See the detailed result >

AT3G19490.1

Model type: Protein coding
Short Description: sodium:hydrogen antiporter 1
Curator Summary: member of Na+/H+ antiporter-Putative family
Computational Description: sodium:hydrogen antiporter 1 (NHD1); FUNCTIONS IN: potassium:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ antiporter NhaD-like (InterPro:IPR018390), Divalent ion symporter (InterPro:IPR004680); BEST Arabidopsis thaliana protein match is: Na+/H+ antiporter 2 (TAIR:AT1G49810.1); Has 2659 Blast hits to 2653 proteins in 794 species: Archae - 96; Bacteria - 1787; Metazoa - 39; Fungi - 48; Plants - 76; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink).
Link: InterPro Scan - TAIR