R90341

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90341

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90341

Determination of introduced cDNA(s)

  • J033070P09 - Rice Full-length cDNAs - Original: J033070P09

    full reading [+] show sequence

    Nucleotide sequence: J033070P09 - full reading 
    GTCTCTTTCG CTGCGTTGCG TCATCAGCTC TGAAACTCTG AAACCAAAAC 
    CCACCCACCC TCGCGGTCGC CGGCGCTCGA ATGGCCCCCA ACGCCGCCGT 
    CCTGGTGCGG CCCCACATCG CCGGCGTCCA CCATCTGCCC ACCGGCCGGC 
    GACTGCCCCG TCTGGCTCCT CCCCAGGCGG TCTCGCCGCC GTTTTCACGG 
    CAGAAGGGAT CTGTAGTGGC TGCGAGTGGA CGTGTCTGGG CGAGTGCGAG 
    TGGTTCGTTT GAGAAAGATC GCATTGGAGA TGACGATGTG TTAGCTTCGC 
    CGCAGATAGT GGAGGAGAGC AAAGTCGATT TGCTGAAGAT TCTGAAGAGT 
    GCCAACACCA TTATTCCCCA CGTAGTGCTG GGGAGCACAA TTCTTGCTCT 
    GGTGTACCCA CCTTCTTTTA CATGGTTCAC AACTAGATAT TATGCACCAG 
    CATTGGGATT CTTGATGTTT GCAGTGGGTG TAAACTCAAG TGTTAAGGAT 
    TTCATTGAGG CTATACAAAG ACCAGATGCT ATAGCTGCTG GCTATGTTGG 
    ACAATTTATT ATCAAGCCTT TCTTAGGATT CCTTTTTGGC ACTCTTGCAG 
    TTACAATTTT CAATCTTCCT ACTGCTTTAG GTGCTGGTAT CATGTTGGTT 
    TCATGTGTGA GTGGAGCACA ACTATCAAAC TATGCAACGT TTCTGACAGA 
    TCCACATATG GCCCCCCTCA GCATTGTTAT GACATCATTG TCAACAGCTA 
    CTGCCGTTTT TGTCACCCCA ACTTTATCCT ACTTTCTTAT TGGCAAGAAA 
    TTACCGGTGG ATGTGAAAGG GATGATGTCC AGTATTGTTC AAATAGTGGT 
    TGCTCCAATT GCTGCCGGAT TGCTTCTGAA TAGATATCTT CCGCGGCTCT 
    GTTCAGCTAT TCAGCCATTT CTCCCTCCAC TATCGGTATT TGTGACTGCT 
    TTATGTGTTG GTTCACCATT GGCCATAAAT ATTAAGGCTG TTTTGTCCCC 
    ATTTGGACTA GCCACAGTGC TTCTCCTTTT TGCATTCCAT ACATCATCTT 
    TTATAGCTGG ATATCATCTT GCTGGTACTT GGTTTCGCGA GTCAGCAGAT 
    GTAAAGGCAC TACAAAGAAC AGTATCTTTT GAGACAGGAA TGCAAAGTAG 
    CCTTCTTGCT CTTGCTTTAG CAAACAGGTT CTTCCCAGAC CCACTAGTGG 
    GAGTGCCCCC GGCTATATCA GTTGTGCTGA TGTCCCTAAT GGGGTTTGCT 
    CTTGTTATGG TGTGGTCCAA GAGAACAAAA GAATAGCTCA TATTGAACTA 
    TTAAAGTCAG TCAGCTACAG AGCAGTGTTC AGTATTAACA GTGATGTACG 
    CTCTTCTAAA ATCACCATGA AGAACAGCCA ATCACAAAAT TGGAGGTGAG 
    GACGGCAGAT GTTTGATGGC TAAGATACAA ACTCTTCCAG TGCCAATAAA 
    CCATGTACAC CATTGCTCTG AATCCTTCTC GCTTTCTTTC GCCGTGGTAC 
    TCTTTTCTTG TTCCTGTTCT GAACTTAACC AAGACCTCAA GTTGTCCAAG 
    TGCAGCTAGG ATTATAAAGT TGTCCAAGTG CAGCTAGGAT TATAAGCATT 
    TATGTGAAAG GATCTCTGTA ACATTTATTC AGTATAAGGA GAAAAAGTGG 
    AGGAAGAAGT AGGAAACAAC AGGTCTTTGA ATTTCCTC

    Gene models with high sequence identity

    1. AT4G22840.1 [+] show detail - Sodium Bile acid symporter family
      E-value: 3e-130; Score: 462.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Bile acid:sodium symporter 3.5e-67
    HMMPfam Bile acid:sodium symporter 5.1e-41

    See the detailed result >

    AT4G22840.1

    Model type
    Protein coding
    Short Description
    Sodium Bile acid symporter family
    Computational Description
    Sodium Bile acid symporter family; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); BEST Arabidopsis thaliana protein match is: bile acid transporter 5 (TAIR:AT4G12030.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR