R90342

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90342

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90342

Determination of introduced cDNA(s)

  • J013053H05 - Rice Full-length cDNAs - Original: J013053H05

    full reading [+] show sequence

    Nucleotide sequence: J013053H05 - full reading 
    GGGCCTCGCC GCGCGAGTGC TCCTCAAAAC GAGCGTAAAC CCGCGCGCCC 
    ATCGCGTCGC GTTCTTAGAA GAACAGACAA CTCGCCTCGC CAAAAGAAAC 
    ATGATGGTGA CATGGCCGTG GCGCGCTCTA CCGTTGGCGG CCGTTCTCTT 
    CCTCTTCCTC TCGCCGGCCG CGTCCGTCGA TACGGTCACC ATGGAGGCTC 
    CACTCGCGGG CAACCGGACG ATCGTGTCGG CCGGAGGGAC CTTCACGCTC 
    GGCTTCTTCA CGCCGGACGT CGCCCCGGCA GGGCGCAGGT ACCTCGGGAT 
    ATGGTACAGC AACATCCTAG CGCGGACCGT CGTGTGGGTC GCCAATCGTC 
    AGAGCCCGGT GGTCGGCGGC TCGCCCACGC TCAAGATCAA CGGCAATGGG 
    AGCCTTGCCA TTGTGGACGG GCAAGGCAGG GTCGTGTGGG CGTCGCCGGT 
    GATGTCGGCT TCTGTGCTGA GCGCCGGCAG CGCCAAGGCG CAGCTCCTTG 
    ACAACGGCAA CTTCGTGCTG CGGTTCGCCA GCGCCGGCGT TGCGTGGCAG 
    AGCTTTGACT ACCCGACCGA CACTCTGCTC CCCGGCATGA AGCTTGGCAT 
    CGACTTCCGC ACCGGCCTTG ACCGGTACAT GAACTCGTGG AGGGCGGCCG 
    ATGACCCGTC CCCCGGAGAG TACTCCTTCC GGATCGACCC GAGCGGCTCG 
    CCGGAGTTTT TCCTGTACCG GTGGTCCACG AGGACGTACG GCAGCGGCCC 
    GTGGAACGGG TACCAGTTCT CCGGCGTGCC GAACCTCAGG ACGAACACCC 
    TCCTGAGCTA CCAGTACGTG TCGACGGCCG ACGAGGCATA CTACCGGTAC 
    GAGGTGGACG ACAGCACGAC GATCCTGACG CGGTTCGTGA TGAACTCGTC 
    GGGGCAGATC CAGAGGCTGA TGTGCATCGA CACGACGCGG TCGTGGAGCG 
    TCTTCTCGTC GTACCCCATG GACGAGTGCG AGGCCTACCG CGCCTGCGGT 
    GCCTACGGCG TCTGCAACGT CGAGCAGTCG CCGATGTGCG GCTGCGCGGA 
    GGGGTTCGAG CCGCGGTACC CCAAGGCATG GGCGCTGCGT GACGGGTCCG 
    GCGGGTGCAT CAGGCGCACG GCGCTCAACT GTACCGGCGG CGACGGGTTC 
    GCCGTGACGA GGAATATGAA GCTGCCGGAG TCGGCGAACG CGACGGTTGA 
    CATGGCGCTG GGCCTGGAGG AGTGCCGGCT CAGCTGCCTG AGCAACTGCG 
    CGTGCCGCGC CTACGCCAGT GCCAACGTCA CCAGCGCGGA CGCCAAGGGG 
    TGCTTCATGT GGACGGCCGA TTTGCTTGAC ATGAGGCAGT TCGACAACGG 
    AGGCCAGGAC CTGTTCGTCC GCCTGGCTGC GTCTGATCTC CCCACCAATT 
    CTGTTTCAGA CAATTCACAG ACAGCTAAGC TCGTCGAAAT CATTGTCCCA 
    TCCGTTGTCG CACTATTGTT GCTTCTAGCT GGACTTGTCA TTTGTGTCAT 
    CAAGGCAAAG AAGAACAGGA AGGCGATCCC ATCAGCACTG AACAATGGAC 
    AGGTTACTCC TTTCGGACAA AGAAACCATA CTGCTTCAGC ACTGAACAAT 
    TGGGAGATTA CTCCCTTCTG GCAAAGAAAC CATGTTGCTG CATCCAACGA 
    TGCCCAGGAC AACAATTCCA TGCGTCCTGC TGGTCAGGGA AATCACCAGG 
    ATTTGGATCT GCCGTCGTTC GTTATAGAAA CCATTCTTTA CGCCACCAAC 
    AACTTTTCAG CTGATAACAA GCTTGGCCAA GGAGGATTTG GCCCTGTCTA 
    CATGGGGAGA CTTGACAACG GACAAGATAT AGCTGTCAAG AGACTGTCAC 
    GTAGATCGAC GCAAGGTCTC CGCGAATTCA AGAATGAAGT CAAGCTGATA 
    GCTAAGCTTC AGCACAGGAA TCTTGTCAGG CTACTTGGTT GCTGCATTGA 
    CGGTTCAGAG AGGATGCTAA TCTACGAGTA CATGCACAAT CGTAGCCTCA 
    ACACTTTCCT GTTCAATGAA GAGAAACAAT CAATTTTAAA CTGGTCAAAG 
    CGATTCAATA TCATCAACGG GATCGCGCGG GGAATACTAT ACCTGCATCA 
    AGATTCCGCG CTACGGATAA TTCATAGAGA TCTTAAAGCA AGCAACATTT 
    TGCTTGACAG AGACATGAAC CCCAAGATCT CAGACTTCGG TGTTGCGAGA 
    ATATTTGGAA CTGACCAGAC TAGTGCATAT ACCAAGAAAG TAGTTGGGAC 
    ATACGGATAC ATGTCTCCTG AATACGCGAT GGACGGCGTA TTCTCGATGA 
    AATCTGACGT CTTCAGCTTC GGCGTCCTGG TACTGGAGAT TGTCAGTGGC 
    AAGAAGAACA GAGGATTCTA CCACAATGAG CTCGACCTGA ACCTCCTTAG 
    ATATGCTTGG AGGCTGTGGA AGGAAGGTCG GAGCTTAGAG TTCTTGGATC 
    AGTCTATCGC CGGCACTTCC TCAAACGTGA CGGAGGTGCT GAGGTGCATC 
    CAGATTGGCC TGCTGTGCGT CCAGGAGCAG CCGAGGCACA GGCCGACCAT 
    GTCGGCGGTG ACCATGATGC TGAGCAGCGA GAGCCCCGCG CTGCTGGAGC 
    CGTGCGAGCC TGCTTTCTGC ACGGGGAGGA GCCTCAGCGA CGACACGGAG 
    GCCAGCCGGT CCAACAGCGC AAGAAGCTGG ACTGTAACAG TTGTAGAGGG 
    CAGATAGCTA CAGCACGGGC TTATCGCAGG ATGAACACTG TACGTTTTGT 
    ATGTAATTTA AGCACAATGG GATTTGATTT AATTATACTC ACTCGGC

    Gene models with high sequence identity

    1. AT4G21380.1 [+] show detail - receptor kinase 3
      E-value: 0; Score: 792.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 9.4e-83
    superfamily Curculin-like (mannose-binding) lectin 5.1e-32
    ProfileScan Protein kinase, catalytic domain 38.153
    ProfileScan Curculin-like (mannose-binding) lectin 18.31
    ProfileScan Apple-like 10.995
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Curculin-like (mannose-binding) lectin 4.8e-34
    HMMSmart Apple-like 0.000000000049
    HMMSmart Serine/threonine-protein kinase domain 4.1e-29
    HMMSmart Tyrosine-protein kinase, catalytic domain 5.3e-41
    Gene3D no description 3.4e-25
    Gene3D no description 1.2e-50
    HMMPfam Serine-threonine/tyrosine-protein kinase 4.9e-50
    HMMPfam S-locus glycoprotein 6.7e-33
    HMMPfam Curculin-like (mannose-binding) lectin 1.7e-31
    HMMPfam PAN-2 domain 4e-20
    HMMPanther RECEPTOR-LIKE PROTEIN KINASE-RELATED 8e-229
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 8e-229

    See the detailed result >

    AT4G21380.1

    Model type
    Protein coding
    Short Description
    receptor kinase 3
    Curator Summary
    encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.
    Computational Description
    receptor kinase 3 (RK3); FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), S-locus, receptor kinase (InterPro:IPR022126); BEST Arabidopsis thaliana protein match is: receptor kinase 2 (TAIR:AT1G65800.1); Has 120297 Blast hits to 118488 proteins in 4631 species: Archae - 97; Bacteria - 13304; Metazoa - 44101; Fungi - 10092; Plants - 34714; Viruses - 410; Other Eukaryotes - 17579 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR