R90344

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90344

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1 rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90344

Determination of introduced cDNA(s)

  • J033051H23 - Rice Full-length cDNAs - Original: J033051H23

    full reading [+] show sequence

    Nucleotide sequence: J033051H23 - full reading
    GAAAAGCGAG AAAAGAAGCC AGCAATCGAA AGCCCAAGCT TCCAAAAATC 
    CGCTTCCAAT TCGCGAAACT ACACTAGTCG TAAGCGCCAA ATCCAACCGA
    CGATGTCGCT GATCCGCCGC AGCAACGTGT TCGACCCCTT CTCCCTCGAC
    CTCTGGGACC CCTTCGACGG CTTCCCCTTC GGCTCCGGCG GCAGCAGCAG
    CGGCAGCATC TTCCCGTCCT TCCCGCGCGG CGCCTCCTCC GAGACCGCGG
    CCTTCGCCGG CGCGCGGATC GACTGGAAGG AGACGCCCGA GGCGCACGTG
    TTCAAGGCGG ACGTGCCGGG GCTGAAGAAG GAGGAGGTCA AGGTGGAGGT
    GGACGACGGC AACATCCTGC AGATCAGCGG CGAGCGCAAC AAGGAGCAGG
    AGGAGAAGAC GGACCAGTGG CACCGCGTGG AGCGCAGCAG CGGCAAGTTC
    CTCCGCAGGT TCCGCCTCCC CGACAACGCC AAGCCGGAGC AGATCAAGGC
    GTCCATGGAG AACGGCGTGC TCACCGTCAC GGTTCCCAAG GAGGAGGCCA
    AGAAGCCCGA CGTCAAGTCC ATCCAGATCT CCGGCTAGGC ATCGCCGGCG
    TGCCGCGTGC GCGACGGAGA GGAGCACGGC GGGGTTTTCG CTTTGGCCTG
    GTTTGTCTGT CGTGAAGGAG AAAATAAAAT CGGGTCCGGT TGAGTCCAGT
    GTGTGTCCGT GTCTGTCTTG AACAGTCGTG TGTCGCGTCG TGTCACTGGG
    TCAGTGTGTT GTTCCAGTGC GCCGTTCATC AGCCGATCAG CGTCTGTACC
    GGTCTTTTGC AACTAGTTAA GTGATGAATA CTATAATCTG TT

    Gene models with high sequence identity

    1. AT3G46230.1 [+] show detail - heat shock protein 17.4
      E-value: 4e-54; Score: 208.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Heat shock protein Hsp20 26.522
    superfamily HSP20-like chaperone 2.2e-43
    Gene3D no description 5.3e-45
    HMMPanther HEAT-SHOCK PROTEIN 17 4.3e-84
    HMMPanther SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY 4.3e-84
    HMMPfam Heat shock protein Hsp20 1.3e-34

    See the detailed result >

    AT3G46230.1

    Model type
    Protein coding
    Short Description
    heat shock protein 17.4
    Curator Summary
    member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seeds
    Computational Description
    heat shock protein 17.4 (HSP17.4); INVOLVED IN: response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G53540.1); Has 7056 Blast hits to 7055 proteins in 1590 species: Archae - 177; Bacteria - 4281; Metazoa - 88; Fungi - 291; Plants - 1609; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR