R90344

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90344

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90344

Determination of introduced cDNA(s)

  • J033051H23 - Rice Full-length cDNAs - Original: J033051H23

    full reading [+] show sequence

    Nucleotide sequence: J033051H23 - full reading 
    GAAAAGCGAG AAAAGAAGCC AGCAATCGAA AGCCCAAGCT TCCAAAAATC 
    CGCTTCCAAT TCGCGAAACT ACACTAGTCG TAAGCGCCAA ATCCAACCGA 
    CGATGTCGCT GATCCGCCGC AGCAACGTGT TCGACCCCTT CTCCCTCGAC 
    CTCTGGGACC CCTTCGACGG CTTCCCCTTC GGCTCCGGCG GCAGCAGCAG 
    CGGCAGCATC TTCCCGTCCT TCCCGCGCGG CGCCTCCTCC GAGACCGCGG 
    CCTTCGCCGG CGCGCGGATC GACTGGAAGG AGACGCCCGA GGCGCACGTG 
    TTCAAGGCGG ACGTGCCGGG GCTGAAGAAG GAGGAGGTCA AGGTGGAGGT 
    GGACGACGGC AACATCCTGC AGATCAGCGG CGAGCGCAAC AAGGAGCAGG 
    AGGAGAAGAC GGACCAGTGG CACCGCGTGG AGCGCAGCAG CGGCAAGTTC 
    CTCCGCAGGT TCCGCCTCCC CGACAACGCC AAGCCGGAGC AGATCAAGGC 
    GTCCATGGAG AACGGCGTGC TCACCGTCAC GGTTCCCAAG GAGGAGGCCA 
    AGAAGCCCGA CGTCAAGTCC ATCCAGATCT CCGGCTAGGC ATCGCCGGCG 
    TGCCGCGTGC GCGACGGAGA GGAGCACGGC GGGGTTTTCG CTTTGGCCTG 
    GTTTGTCTGT CGTGAAGGAG AAAATAAAAT CGGGTCCGGT TGAGTCCAGT 
    GTGTGTCCGT GTCTGTCTTG AACAGTCGTG TGTCGCGTCG TGTCACTGGG 
    TCAGTGTGTT GTTCCAGTGC GCCGTTCATC AGCCGATCAG CGTCTGTACC 
    GGTCTTTTGC AACTAGTTAA GTGATGAATA CTATAATCTG TT

    Gene models with high sequence identity

    1. AT3G46230.1 [+] show detail - heat shock protein 17.4
      E-value: 4e-54; Score: 208.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Heat shock protein Hsp20 26.522
    superfamily HSP20-like chaperone 2.2e-43
    Gene3D no description 5.3e-45
    HMMPanther HEAT-SHOCK PROTEIN 17 4.3e-84
    HMMPanther SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY 4.3e-84
    HMMPfam Heat shock protein Hsp20 1.3e-34

    See the detailed result >

    AT3G46230.1

    Model type
    Protein coding
    Short Description
    heat shock protein 17.4
    Curator Summary
    member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seeds
    Computational Description
    heat shock protein 17.4 (HSP17.4); INVOLVED IN: response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G53540.1); Has 7056 Blast hits to 7055 proteins in 1590 species: Archae - 177; Bacteria - 4281; Metazoa - 88; Fungi - 291; Plants - 1609; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR