R90355

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90355

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90355

Determination of introduced cDNA(s)

  • J023075H05 - Rice Full-length cDNAs - Original: J023075H05

    full reading [+] show sequence

    Nucleotide sequence: J023075H05 - full reading
    GGCACGATAC TGGACCCCTC GTGATGGACA CCCGCCTCCC CCTCCTCCTC 
    CTCCTCGCCG GCGTCGTCGC CGCCGCGGCG CCACTGCTCG CCACCGCCCA
    GCTCTCCGCC GACTTCTACT CCTCCACCTG CCCCAACGTC GAGAAGGTCG
    TCTCCACCGT CATCGAGCGC AAGTTCAAGG AGGACCCTAC CACCTCCGCC
    CTCCTCCTCC GCCTCCTCTT CCACGACTGC TTCGCCAATG GATGCGACGC
    GTCGATCTTG ATCGACCCGC TGTCGAACCA GAGCGCGGAG AAGGAGGCGG
    GGCCGAACAT CTCGGTGAAG GGCTACGACA TCATCGACGA GATCAAGACG
    GAGCTGGAGA AGGAGTGCCC GCAGGTGGTG TCGTGCGCGG ACATCGTGGC
    GCTCAGCACG CGCGACAGCG TGCGCCTCGC CGGGGGCCCC AACTACGACG
    TGCCCACCGG CCGCCGCGAC TCGCTCGTCT CCAACCGCGA GGAAGGCGAC
    TCGCTCCCCG GCCCGGACAT CGCCGTCCCG AAGCTCATGG CGCAGTTCTC
    CGAGAAGGGG TTCAGCGCCG ACGAGATGGT CGTCCTCCTC GCCGGCGGCC
    ACTCCATCGG CAAGGCCAAG TGCTTCTTCA TCGAGGTCGA CGCGGCGCCC
    ATCGACCCGA CCTACCGCTC CAACATCACC GCCTTCTGCG ACGGCAAGGA
    CGGCGACAAG GGAGCCGTCC CCCTTGATCC CATCACCCCC GACGTCGTCG
    ACCCCAACTA CTTCGAACTC GTCATGGACA AGAAGATGCC GCTCACCATC
    GACCGCCTCA TGGGGATGGA CGCAAGAACG AAGCCCATCG TGGAGTCCAT
    GGGTAAAAAG ACCGACCAGT TCGACGCCAC CTTCGGCAAG GCCATGACGA
    AGCTCAGCGG CATGAAGGTC ATCACCGGCA AGGACGGCGA GATCAGGAAA
    TCGTGCTCCG AGTTCAACAA CCCGGTGAAC ACCGACGACG GCCCGTCCGT
    CATCCGGATC AGCTCGCTGA ACCCCGAGGA GATGATGGGC TCCTTTGCGC
    CGGCCACCGG GAAGTCCCCC TCCGCCGCCT CGGAGTCCAG GAAGGTGGCA
    CCAGGCGGCG CCATGGAGGA AAGGATGGCG GCCGGTGAGG CGAAGACGGA
    TGCTTCAGGC GGCGCCATGG CGGAAAGGTT GGCGGCCGGT GAGGCGAAGA
    CGGCTGCTGC GGCCTCCGAG GATGAAAACC AAGCGGCAGC TGGTGGCGCC
    GCCGGCGATG AGGCGGCGGC GGAGGAGGAG GGGACCAAGT CCAACAAGAA
    GAAGGCCGAG CGGGTGACCG CAGAAGTACC TGCCGACGAG GCGGCGCCGG
    CGGCAAAGAA GCCGAGGGCG ATGGGCGGAC AATCGTTCAG CATGGCCGGC
    GCCGGCGCCG GCGGCGAGCC GGCGAAGAAG TCGACGGCGA TGAAGAGCCA
    ATCCTTCAGC ATGGCGGGCC AGCCGCAACA GTAGACGAAG AAGAAGAAGA
    AGAAGAAGAA GAAGAAGAAG ATGCCGCGCT GCTAGCTGAG CCGTTCGCAC
    GGCGGCCTGA TCGAGCGCGC ATTGCCATTT ATCGTTTTTG ATTTTCTCAC
    TCTCTATCTC GCCTGTTTGT AGAAGGGACG AGCATACTAC TACCGCTAAT
    TACTAGGCTT AATTTTGCAA GTAATGTCGT GTCGAGTTTT TTTTAACAGC
    GACCAAAAGC TCGATGATAT TTTCTCTTTT CATTTTCCCT TTTTTTTTTG
    TCATTCTTGT TAAGAATTCG TTGCCAACTC AATCTGGCTG GCAAATAAAA
    GTGTATTAAA TTTCCCCTTT TTATATAGAG AGACAGGTAC ACAATTGTAA
    TTGTTTTTTT AGATCAACCA ATGCATGTGA AACGATATAC GTGCTACT

    Gene models with high sequence identity

    1. AT4G26010.1 [+] show detail - Peroxidase superfamily protein
      E-value: 2e-63; Score: 240.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Haem peroxidase 6.5e-93
    PatternScan Peroxidase, active site 0
    Gene3D no description 4.6e-54
    HMMPfam Haem peroxidase, plant/fungal/bacterial 5.1e-63
    ProfileScan Haem peroxidase, plant/fungal/bacterial 65.577
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Plant peroxidase 3.7e-43
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-24

    See the detailed result >

    AT4G26010.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G34510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR