R90364

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90364

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1 rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90364

Determination of introduced cDNA(s)

  • J023141D23 - Rice Full-length cDNAs - Original: J023141D23

    full reading [+] show sequence

    Nucleotide sequence: J023141D23 - full reading
    GATCCAAACA GCTTCCTTCC TCCCCCCTCC TGGCTCCGCT CGCTGGATCT 
    CTCCTCTTTC TCTCTCGCAC CCTCTCCCCG GCGAGGTAGG AGGGATGGGG
    CGGGAGGTGG CGGAGAGCTG CGTCGACGGG GTGGTCATGC AGATGGTGGC
    GGCCTACTGC GGCGGCTTCT ACGCCGCCAA GCCGGAGCTC GCCGCCCGTC
    GCATCGAGGC CATCGGCTTC CAGGTCGGCC ACCAGCTCAC CGAGAGGCCA
    GTGCTGCAAA GTTAACCAAA GTTTCTGTTC AAAATCAGAT ATACTATGGA
    GCGCCCTCGA TTTAGTGATC ATCTTGAAGC AATCAAATTT ATCTGCAAAG
    ACTTTTGGTC AGAGTTATTC AAGAAGCAAA TTGACAATCT GAAGACTAAT
    CATAGGGGCA CATTTGTTCT TCAAGATAAC CATTTCCGGT GGCTTACTCG
    TGTTTCTGTA GATCCATCTG TAGAGAGCAT GGATGCAACT GAGAATGATT
    CTACAACACT AGGTGATAGC GCAGCCCAAA CAACAAGCAT GCTTCTGTAC
    TTTCCATGCG GGATAATAAG AGGTGCCTTG ACCAATTTGG GGATTTCTTG
    TTCTGTCACT GCAGACATGT CCAACCTTCC AGCATGTTCT TTTGTTGTGC
    GCATAAAGAC ATGAGCTGCA ATAAATGATT TGAATACCAT TATATGCATG
    CTTGTGGTAT AAAGTGGTCT GTACATTCAA GGAGGGGGGA AACCCGCCGT
    GTAGCTGGTC TTTTTTTTTT TTCCTTTCCC CTCTTGTTCT TACTGGCACA
    TGTTTACTTT TCCTCATACC TGCCTTGTGC GCTTATTAAG ATTGGTGTAA
    TTCTGTGATC CAAAATGTTG ACAAGGGAAG ACAAATGTAA TATTTCTCCT
    GAGAGACTGG CTATAGCTAA CTTTTGTTGT CG

    Gene models with high sequence identity

    1. AT3G05000.1 [+] show detail - Transport protein particle (TRAPP) component
      E-value: 1e-71; Score: 266.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transport protein particle (TRAPP) component 3.1e-31
    HMMPanther TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9.4e-56

    See the detailed result >

    AT3G05000.1

    Model type
    Protein coding
    Short Description
    Transport protein particle (TRAPP) component
    Computational Description
    Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194); Has 457 Blast hits to 457 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 137; Plants - 66; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR