R90371

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90371

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90371

Determination of introduced cDNA(s)

  • J023110C23 - Rice Full-length cDNAs - Original: J023110C23

    full reading [+] show sequence

    Nucleotide sequence: J023110C23 - full reading 
    GATACGCCAG AGCGCTACAA AATGGCCCAC GCCGCCGCGG CCACGGGCGC 
    ACTGGCACCG CTGCATCCAC TGCTCCGCTG CACGAGCCGT CATCTCTGCG 
    CCTCGGCTTC CCCTCGCGCC GGCCTCTGCC TCCACCACCA CCGCCGCCGC 
    CGCCGCAGCA GCCGGAGGAC GAAACTCGCC GTGCGCGCGA TGGCACCGAC 
    GCTGTCCTCG TCGTCGACGG CGGCGGCAGC TCCCCCGGGG CTGAAGGAGG 
    GCATCGCGGG GCTCTACGAC GAGTCGTCCG GCGTGTGGGA GAGCATCTGG 
    GGCGAGCACA TGCACCACGG CTTCTACGAC GCCGGCGAGG CCGCCTCCAT 
    GTCCGACCAC CGCCGCGCCC AGATCCGCAT GATCGAGGAA TCCCTCGCCT 
    TCGCCGCCGT CCCCGATGAT GCGGAGAAGA AACCCAAAAG TGTAGTTGAT 
    GTTGGCTGTG GCATTGGTGG TAGCTCAAGA TACTTGGCGA ACAAATACGG 
    AGCGCAATGC TACGGCATCA CGTTGAGTCC GGTGCAGGCT GAAAGAGGAA 
    ATGCCCTCGC GGCAGAGCAA GGGTTATCAG ACAAGGTCTC CTTTCAAGTT 
    GGTGATGCAT TGGAGCAGCC TTTTCCTGAT GGGCAGTTTG ATCTTGTCTG 
    GTCCATGGAG AGTGGCGAGC ACATGCCAGA CAAACGGCAG TTTGTAAGCG 
    AGCTGGCACG CGTCGCAGCT CCTGGGGCGA GAATAATCAT TGTGACCTGG 
    TGCCATAGGA ACCTCGAGCC ATCCGAAGAG TCCCTGAAAC CTGATGAGCT 
    GAATCTCCTG AAAAGGATAT GCGATGCATA TTATCTCCCA GACTGGTGCT 
    CTCCTTCTGA TTATGTCAAA ATTGCCGAGT CACTGTCTCT TGAGGATATA 
    AGGACAGCTG ATTGGTCAGA GAACGTCGCC CCATTCTGGC CTGCGGTTAT 
    AAAATCAGCA TTGACATGGA AAGGTTTAAC TTCTCTGCTA AGAAGTGGGT 
    GGAAGACGAT AAGAGGTGCA ATGGTGATGC CTCTGATGAT CGAAGGATAC 
    AAGAAAGGGC TCATCAAATT CACCATCATC ACCTGTCGCA AGCCCGAAAC 
    AACGCAGTAG TACCCTAGTA GTGAAATTAC GCTCCTGCTA TCTTCTCCAT 
    CACGAATAAT GCAAATTCTG ACGAGTTAGC ACCTACTGAT GGCGATTTGT 
    TGATTTGGGG AACAGCCAGT GCACTGTTAC CACGTCATTG ATTTTGTACT 
    CGTCAGACTT AAAAAAAAAA TATCCATGAA TGTGCACTCC AAATACGTCA 
    AGAAATTCTT AGATCTTCAG ACCAACTCGT CAGCTAGAGG TGGCTAAAAA 
    GCTCATTTAG CTCCCTCGGT GCAAGATTGC TTTGATTGAC CTAGTTTTCT 
    TCTTAAAACT AAAACTATTT TACTTTGGAT GG

    Gene models with high sequence identity

    1. AT1G64970.1 [+] show detail - gamma-tocopherol methyltransferase
      E-value: 2e-119; Score: 426.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily S-adenosyl-L-methionine-dependent methyltrans 9.5e-62
    HMMPfam Methyltransferase type 11 4.5e-21
    HMMPanther TOCOPHEROL O-METHYLTRANSFERASE 1.6e-79
    HMMPanther METHYLTRANSFERASE 1.6e-79
    Gene3D no description 3.4e-46

    See the detailed result >

    AT1G64970.1

    Model type
    Protein coding
    Short Description
    gamma-tocopherol methyltransferase
    Curator Summary
    gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves
    Computational Description
    gamma-tocopherol methyltransferase (G-TMT); CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G73600.1); Has 14618 Blast hits to 14609 proteins in 2288 species: Archae - 408; Bacteria - 10917; Metazoa - 203; Fungi - 466; Plants - 497; Viruses - 0; Other Eukaryotes - 2127 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR