R90376

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90376

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90376

Determination of introduced cDNA(s)

  • J033071L17 - Rice Full-length cDNAs - Original: J033071L17

    full reading [+] show sequence

    Nucleotide sequence: J033071L17 - full reading
    GAAGTGCTAG CTAGCTAGCA AAAGACAACT CAAGCCAAAA CCATCTCAGA 
    GCTTCAGAGA GGAAGACAAT GGCCGGTGGA GGAGATGAGC TGAAGCTGCT
    GGGGATGTGG GCGAGCCCGT TCGCGCTGCG AGCGAAGCTC GCGCTCAGCT
    TCAAGGGCCT GAGCTACGAG TACGTCGAGG AGGATCTCAA GAACAAGAGC
    GAGCTGCTTC TCACCTCCAA CCCGGTGCAC AAGAAGGTAC CCGTGCTCAT
    CCACAACGGC AAGCCCGTCT GCGAGTCGCA GGTCATCGTG CAGTACATCG
    ACGAGGCGTT CCCCGACGCC GGCGTTCCTC TCCTCCCATC CGACCCCTAC
    GACCGTGCCG TCGCTCGCTT CTGGGCCGCC TACATCGACG ACAAGCTGTT
    GAAGTCATGG CTGCAGGCGT CGATGTGCAA GACGGAGCAG GAGAAGGCGG
    CGGCGATGAA GGAGACGTTC GCGGCGGTGG CGAACCTGGA GGCGGCGTTC
    AAGGAGTGCT CCAAGGGGAA GCCCTTCTTC GGCGGCGACG CCGTCGGGTA
    CGTGGACGTC ACGCTCGGCG CCGTGGTCGG GTTTGTGCGC GTCGGTGAAG
    CCGTGCACGG GATGAGGCTG TTCGATGCGA GCCGGAGCCC GCTCCTTGAC
    GCGTGGCTGG ACCGCTTCGC CGCGCTGGAC GCTGCCAAGG CGGTGTTGCC
    GGACACCGGT AGGCTGGCCG AGTACGCCAA GATGAAGCAG GCAGAGTGGG
    CAGCAGCTGC CACCAACTGA GCCAGCATGG CCACGTCTGG TACTCTCGTG
    GGGAGATGAA GTTGGTGTTG GTGTGCCACC CGTACCGTAC GTAGCTAGTC
    CTGTCACACG ATGTGACGAC TGTGTGAACT TTGCTACTAT ACGCAATAAA
    ATTGTGAAGT CGTTAAGTTT TCGTAAGT

    Gene models with high sequence identity

    1. AT1G10370.1 [+] show detail - Glutathione S-transferase family protein
      E-value: 6e-57; Score: 218.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glutathione S-transferase, N-terminal 0.0000000000025
    HMMPfam Glutathione S-transferase, C-terminal 0.0000045
    Coil coiled-coil 0
    HMMPanther GLUTATHIONE S-TRANSFERASE 1.1e-109
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 1.1e-109
    superfamily Glutathione S-transferase, C-terminal-like 4.9e-43
    superfamily Thioredoxin-like fold 2.2e-25
    Gene3D Thioredoxin fold 5.7e-20
    Gene3D Glutathione S-transferase, C-terminal-like 2.9e-48
    ProfileScan Glutathione S-transferase, N-terminal 22.287
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 17.421

    See the detailed result >

    AT1G10370.1

    Model type
    Protein coding
    Short Description
    Glutathione S-transferase family protein
    Computational Description
    EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to water deprivation, response to karrikin, toxin catabolic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 18 (TAIR:AT1G10360.1); Has 6064 Blast hits to 6029 proteins in 1096 species: Archae - 0; Bacteria - 2896; Metazoa - 397; Fungi - 130; Plants - 2065; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR